test dag

maxplanck-ie · Dec 19, 2024 · 11d92b1 · 11d92b1
1 parent 6f35785
commit 11d92b1
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/.ci_stuff/test_dag.sh b/.ci_stuff/test_dag.sh
@@ -321,7 +321,7 @@ WC=`mRNAseq --mode alignment,alignment-free -i PE_input -o output --rMats --samp
 if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 1568 ]; then exit 1 ; fi
 # three prime sequencing
 WC=`mRNAseq -i PE_input -o output --mode three-prime-seq --sampleSheet .ci_stuff/test_sampleSheet.tsv --snakemakeOptions " --dryrun --conda-prefix /tmp" .ci_stuff/organism.yaml | tee >(cat 1>&2) | grep -v -f .ci_stuff/test_ignore_patterns.txt | sed '/^\s*$/d' | sed '/^host:/d' | wc -l `
-if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 1668 ]; then exit 1 ; fi
+if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 1686 ]; then exit 1 ; fi
 WC=`mRNAseq -i PE_input -o output --mode three-prime-seq,deepTools_qc --sampleSheet .ci_stuff/test_sampleSheet.tsv --snakemakeOptions " --dryrun --conda-prefix /tmp" .ci_stuff/organism.yaml | tee >(cat 1>&2) | grep -v -f .ci_stuff/test_ignore_patterns.txt | sed '/^\s*$/d' | sed '/^host:/d' | wc -l `
 if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 2109 ]; then exit 1 ; fi
 #allelic