ci tests chipseq multicomp no control

maxplanck-ie · Apr 11, 2024 · 0401e66 · 0401e66
1 parent 770ae19
commit 0401e66
Showing 1 changed file with 4 additions and 0 deletions.
diff --git a/.ci_stuff/test_dag.sh b/.ci_stuff/test_dag.sh
@@ -287,6 +287,10 @@ WC=`ChIP-seq -d outdir --useSpikeInForNorm --sampleSheet .ci_stuff/test_sampleSh
 if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 1059 ]; then exit 1 ; fi
 WC=`ChIP-seq -d outdir --useSpikeInForNorm --sampleSheet .ci_stuff/test_sampleSheet_multiComp.tsv --snakemakeOptions " --dryrun --conda-prefix /tmp" --peakCaller Genrich --fromBAM BAM_input/filtered_bam/ .ci_stuff/spikein_organism.yaml .ci_stuff/ChIP.sample_noControl_config.yaml | tee >(cat 1>&2) | grep -v "conda installation\|Conda environment" | sed '/^\s*$/d' | wc -l`
 if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 1045 ]; then exit 1 ; fi
+#multiComp and noInput and fromBam
+WC=`ChIP-seq -d outdir --sampleSheet .ci_stuff/test_sampleSheet_multiComp.tsv --snakemakeOptions " --dryrun --conda-prefix /tmp" --peakCaller SEACR --fromBAM BAM_input/filtered_bam/ .ci_stuff/spikein_organism.yaml .ci_stuff/ChIP.sample_noControl_config.yaml | tee >(cat 1>&2) | grep -v "conda installation\|Conda environment" | sed '/^\s*$/d' | wc -l`
+if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 1045 ]; then exit 1 ; fi
+
 
 # mRNA-seq
 WC=`mRNA-seq -i PE_input -o output --snakemakeOptions " --dryrun --conda-prefix /tmp" .ci_stuff/organism.yaml | tee >(cat 1>&2) | grep -v "conda installation\|Conda environment" | sed '/^\s*$/d' | wc -l`