Skip to content

Releases: maxplanck-ie/dissectBCL

v0.3.2

16 Dec 09:25
86aea29
Compare
Choose a tag to compare
v0.3.2 Pre-release
Pre-release

Change to deal with parkour organism returning [name, label, yaml].
String in e-mail isn't split, try - except to handle none-types (project not tracked under FID in parkour).
contamination screen includes s.pombe

v0.3.1

16 Aug 09:38
c06b512
Compare
Choose a tag to compare
v0.3.1 Pre-release
Pre-release
  • wolbachia / staph aureus included in contamination
  • docs requirements
  • wd40 cleanup

Ludwig (der Jüngere)

19 Jul 10:31
a0f0d36
Compare
Choose a tag to compare
  • Sanitate parkour organisms
  • parkour fex status updates upon release
  • properly capture disk quota errors
  • properly take Q30 into account
  • Pre-existing BCLConvert logs get purged
  • pbr dropped in favor of scm, linting moved to ruff
  • workflow oriented around flowcellClass, flowcell 'walks' now possible.
  • Documentation is updated
  • Logging structure somewhat harmonized
  • moved over to pathlib over os.path, although this isn't finished yet.

v0.2.8

27 May 15:41
c764d85
Compare
Choose a tag to compare
v0.2.8 Pre-release
Pre-release
  • Requires the MultiQC version 1.21 or later
  • fetchLatestSeqDir function from misc.py was updated to detect the latest sequencing_data volume from PI directory.

v0.2.7

27 Mar 15:48
9f11e76
Compare
Choose a tag to compare
v0.2.7 Pre-release
Pre-release
  • emailProjectFinished.py now populates parkour 'put_filepaths' API endpoint with the data location (subsequently, parkour also sets statuses from 'sequenced' to 'delivered')
  • Dependencies were updated. Ruamel API deprecated an odd behavior on how YAML was dumped, this was adjusted now.
  • Subject for emails take a config value now, so that dissect test runs can be discerned easily.
  • We don't use userList.txt anymore, instead we get user contact details from Parkour API
  • Configuration of Parkour was simplified (just 1 URL)
  • Lanesplit checks on sampleIDs (rather than samplenames), so it's lane-aware now.
  • split up zebrafish contamination into mito - rrna - zebrafish

v0.2.6

04 Aug 08:58
e181c4e
Compare
Choose a tag to compare
v0.2.6 Pre-release
Pre-release
  • improve logger
  • miseq req depths override
  • sanitize spaces in sample names

validateMiSeq

31 May 07:01
fcb70a3
Compare
Choose a tag to compare
validateMiSeq Pre-release
Pre-release
  • MiSeq runs are validated for runcompletionstatus
  • new seqfac dir nested structure

autoP5

17 May 13:44
Compare
Choose a tag to compare
autoP5 Pre-release
Pre-release
  • Purge apostrof
  • Auto P5 reverse complement in case of MiSeq runs (only if the full flow cell is bad)

colliders

13 Mar 09:31
Compare
Choose a tag to compare
colliders Pre-release
Pre-release
  • deal with omitted colliding samples
  • discriminate non-omitted empty vs omitted in email / mqc report
  • escape included projects not present in the FID in parkour
  • boost flake/precommit
  • scATAC protocol name changes + tests for masking them
  • project returns in the email are only those of the lane(s).

v0.2.2: bugfixes (#127)

22 Feb 13:13
8c81f6c
Compare
Choose a tag to compare
Pre-release
  • sanitize é in user / PI names.
  • fex uploads can be disabled in the config
  • mismatch changes in the demuxsheet are reflected in the email + mqc report as well.