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imStacks
David Legland edited this page Mar 1, 2019
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The imStacks module allows manipulation and display of 3D images. Most functions works for grayscale and color image. In particular, the Slicer function creates a 3D interactive slicer for 3D images.
Slicer - GUI for exploration of 3D images, using Object Oriented Programming
OrthoSlicer3d - Display 3D interactive orthoslicer
orthoSlices - Display three orthogonal slices in the same figure
orthoSlices3d - Show three orthogonal slices of a 3D image
slice3d - Show a moving 3D slice of an image
showXSlice - Show YZ slice of a 3D image
showYSlice - Show ZX slice of a 3D image
showZSlice - Show XY slice of a 3D image
readstack - Read either a list of 2D images (slices), or a 3D image
savebinstack - Save an binary stack to a file, as RGB Image.
savestack - Save an image stack to a file or a serie of files
metaImageInfo - Read information header of meta image data
metaImageRead - Read an image in MetaImage format
metaImageWrite - Write header and data files of an image in MetaImage format
stackSize - Compute the size of a 3D stack in [x y z] form
stackExtent - Compute the physical extent of a 3D image
isColorStack - Check if a 3D stack is color or gray-scale
createRGBStack - Concatenate 2 or 3 grayscale stacks to form a color stack
stackSlice - Extract a planar slice from a 3D image
stackRotate90 - Rotate a 3D image by 90 degrees around one image axis
rotateStack90 - Rotate a 3D image by 90 degrees around one image axis
flipStack - Flip a 3D image along specified X, Y, or Z dimension