Update SSSOM Extended Prefix Map #568
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matentzn
reviewed
Dec 16, 2024
src/sssom/obo.epm.json
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| @@ -5282,6 +5296,7 @@ | |||
| "prefix_synonyms": [ | |||
| "MEDLINE", | |||
| "PubMed", | |||
| "PubMed ID", | |||
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@cthoyt whitespace in a prefix, even if synonym?
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matentzn
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Jan 20, 2025
| "https://bioregistry.io/BCGO:", | ||
| "https://bioregistry.io/bcgo:", | ||
| "https://purl.obolibrary.org/obo/BCGO_", | ||
| "https://www.ebi.ac.uk/ols/ontologies/bcgo/terms?iri=http://purl.obolibrary.org/obo/BCGO_" | ||
| "https://www.ebi.ac.uk/ols/ontologies/bcgo/terms?iri=http://purl.obolibrary.org/obo/BCGO_", | ||
| "https://www.ebi.ac.uk/ols4/ontologies/bcgo/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252F" |
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same for all or many obo ontologies
| @@ -399,8 +400,8 @@ | |||
| "http://purl.bioontology.org/ontology/BTO/BTO:", | |||
| "http://www.brenda-enzymes.org/ontology.php?ontology_id=3&id_go=", | |||
| "http://www.ebi.ac.uk/ols/ontologies/bto/terms?iri=http://purl.obolibrary.org/obo/BTO_", | |||
| "http://www.ebi.ac.uk/ols4/ontologies/bto/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252F", | |||
| @@ -5282,6 +5302,7 @@ | |||
| "prefix_synonyms": [ | |||
| "MEDLINE", | |||
| "PubMed", | |||
| "PubMed ID", | |||
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@cthoyt do we really want to add prefixes with spaces?
| @@ -5290,6 +5311,7 @@ | |||
| "http://bio2rdf.org/pubmed:", | |||
| "http://bioregistry.io/MEDLINE:", | |||
| "http://bioregistry.io/PMID:", | |||
| "http://bioregistry.io/PubMed ID:", | |||
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This pull request updates sssom extended prefix map (epm). Make sure you run make tests manually.