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@mahmoodlab

Mahmood Lab @ Harvard/MGB

AI for Pathology Image Analysis Lab @ HMS / BWH

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  1. CLAM CLAM Public

    Open source tools for computational pathology - Nature BME

    Python 1.2k 373

  2. UNI UNI Public

    Towards a general-purpose foundation model for computational pathology - Nature Medicine

    Jupyter Notebook 367 52

  3. CONCH CONCH Public

    A vision-language foundation model for computational pathology - Nature Medicine

    Python 293 23

  4. TITAN TITAN Public

    Multimodal Whole Slide Foundation Model for Pathology

    Jupyter Notebook 122 13

  5. HIPT HIPT Public

    Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)

    Jupyter Notebook 521 91

  6. HEST HEST Public

    HEST: Bringing Spatial Transcriptomics and Histopathology together - NeurIPS 2024 (Spotlight)

    Python 191 15

Repositories

Showing 10 of 30 repositories
  • TITAN Public

    Multimodal Whole Slide Foundation Model for Pathology

    mahmoodlab/TITAN’s past year of commit activity
    Jupyter Notebook 122 13 0 1 Updated Dec 20, 2024
  • HEST Public

    HEST: Bringing Spatial Transcriptomics and Histopathology together - NeurIPS 2024 (Spotlight)

    mahmoodlab/HEST’s past year of commit activity
    Python 191 15 7 0 Updated Dec 14, 2024
  • CLAM Public

    Open source tools for computational pathology - Nature BME

    mahmoodlab/CLAM’s past year of commit activity
    Python 1,159 GPL-3.0 373 16 6 Updated Dec 6, 2024
  • SurvPath Public

    Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction - CVPR 2024

    mahmoodlab/SurvPath’s past year of commit activity
    Python 119 6 6 0 Updated Nov 19, 2024
  • MADELEINE Public

    MADELEINE: multi-stain slide representation learning (ECCV'24)

    mahmoodlab/MADELEINE’s past year of commit activity
    Python 33 4 2 1 Updated Oct 15, 2024
  • TANGLE Public

    Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024

    mahmoodlab/TANGLE’s past year of commit activity
    Python 87 3 4 0 Updated Oct 15, 2024
  • TriPath Public

    Analysis of 3D pathology samples using weakly supervised AI - Cell

    mahmoodlab/TriPath’s past year of commit activity
    Python 94 8 0 0 Updated Sep 16, 2024
  • PANTHER Public

    Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024

    mahmoodlab/PANTHER’s past year of commit activity
    Jupyter Notebook 103 11 1 0 Updated Sep 16, 2024
  • MMP Public

    Multimodal prototyping for cancer survival prediction - ICML 2024

    mahmoodlab/MMP’s past year of commit activity
    Jupyter Notebook 63 7 2 0 Updated Sep 16, 2024
  • UNI Public

    Towards a general-purpose foundation model for computational pathology - Nature Medicine

    mahmoodlab/UNI’s past year of commit activity
    Jupyter Notebook 367 52 17 1 Updated Sep 12, 2024
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