fix test config #32
Workflow file for this run
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| name: CI | |
| on: [push, pull_request] | |
| env: | |
| SKIP: true | |
| jobs: | |
| before_script: | |
| runs-on: self-hosted | |
| strategy: | |
| matrix: | |
| node-version: [ 20.x ] | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.x' | |
| - name: Install dependencies | |
| run: | | |
| conda init bash | |
| source ~/.bashrc | |
| conda info | |
| source activate ci_env | |
| shell: bash | |
| test_sarvey: | |
| runs-on: self-hosted | |
| needs: before_script | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.x' | |
| - name: Run tests | |
| run: | | |
| conda init bash | |
| source ~/.bashrc | |
| conda create -n ci_temp_env --clone ci_env | |
| wget https://raw.githubusercontent.com/insarlab/MiaplPy/main/conda-env.yml | |
| conda-merge conda-env.yml tests/CI_docker/context/environment_sarvey.yml > env.yml | |
| mamba update -n ci_temp_env -f env.yml | |
| source activate ci_temp_env | |
| rm -rf tests/testdata | |
| wget -nv -c -O testdata.zip https://seafile.projekt.uni-hannover.de/f/4b3be399dffa488e98db/?dl=1 | |
| unzip testdata.zip | |
| mv testdata tests/ | |
| make pytest | |
| shell: bash | |
| - name: create docs | |
| run: | | |
| conda init bash | |
| source ~/.bashrc | |
| source activate ci_env | |
| make docs | |
| shell: bash | |
| - name: Upload coverage report | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-report | |
| path: htmlcov/ | |
| - name: Upload report.html | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: test-report | |
| path: report.html | |
| - name: Upload docs | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: docs | |
| path: docs/_build/html/ | |
| - name: Upload cobertura coverage report | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: cobertura-coverage | |
| path: coverage.xml | |
| - name: Upload junit report | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: junit-report | |
| path: report.xml | |
| test_styles: | |
| runs-on: self-hosted | |
| needs: before_script | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.x' | |
| - name: Install dependencies | |
| run: | | |
| conda init bash | |
| source ~/.bashrc | |
| conda info | |
| source activate ci_env | |
| make lint | |
| shell: bash | |
| - name: Upload flake8 log | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: flake8-log | |
| path: tests/linting/flake8.log | |
| - name: Upload pycodestyle log | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: pycodestyle-log | |
| path: tests/linting/pycodestyle.log | |
| - name: Upload pydocstyle log | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: pydocstyle-log | |
| path: tests/linting/pydocstyle.log | |
| test_urls: | |
| runs-on: self-hosted | |
| needs: before_script | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.x' | |
| - name: Install dependencies | |
| run: | | |
| conda init bash | |
| source ~/.bashrc | |
| conda info | |
| source activate ci_env | |
| make urlcheck | |
| shell: bash | |
| test_sarvey_install: | |
| runs-on: self-hosted | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.x' | |
| - name: Install Miniconda | |
| run: | | |
| if [ -d "$HOME/miniconda" ]; then | |
| echo "Updating existing Miniconda installation." | |
| wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh | |
| bash miniconda.sh -b -u -p $HOME/miniconda | |
| else | |
| echo "Installing Miniconda." | |
| wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh | |
| bash miniconda.sh -b -p $HOME/miniconda | |
| fi | |
| echo "$HOME/miniconda/bin" >> $GITHUB_PATH | |
| source $HOME/miniconda/bin/activate | |
| conda init bash | |
| source ~/.bashrc | |
| - name: Install dependencies | |
| run: | | |
| source $HOME/miniconda/bin/activate | |
| conda install mamba -n base -c conda-forge | |
| mamba update -n base mamba conda | |
| mamba info | |
| mamba env remove --name sarvey_testinstall --yes || echo "Environment sarvey_testinstall does not exist" | |
| pip install conda-merge | |
| wget https://raw.githubusercontent.com/insarlab/MiaplPy/main/conda-env.yml | |
| conda-merge conda-env.yml tests/CI_docker/context/environment_sarvey.yml > env.yml | |
| mamba env create --name sarvey_testinstall -f env.yml | |
| source activate sarvey_testinstall | |
| pip install git+https://github.com/insarlab/MiaplPy.git | |
| pip install . | |
| pip check | |
| cd .. | |
| python -c "import sarvey; print(sarvey)" | |
| shell: bash | |
| deploy_pages: | |
| runs-on: self-hosted | |
| needs: test_sarvey | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.x' | |
| - name: Deploy to GitHub Pages | |
| if: env.SKIP == 'false' | |
| run: | | |
| rm -rf public | |
| mkdir -p public/doc | |
| mkdir -p public/images/ | |
| mkdir -p public/coverage | |
| mkdir -p public/test_reports | |
| cp -r docs/_build/html/* public/doc/ | |
| cp -r htmlcov/* public/coverage/ | |
| cp report.html public/test_reports/ | |
| ls -al public | |
| ls -al public/doc | |
| ls -al public/coverage | |
| ls -al public/test_reports | |
| shell: bash | |
| - name: Upload to GitHub Pages | |
| if: env.SKIP == 'false' | |
| uses: peaceiris/actions-gh-pages@v4 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: ./public |