perl_ci.yml: remove bio::kmer from cache #8
Workflow file for this run
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# https://docs.github.com/en/actions/reference/workflow-syntax-for-github-actions | |
# https://docs.github.com/en/actions/guides/publishing-docker-images | |
# https://github.com/docker/build-push-action/blob/master/docs/advanced/share-image-jobs.md | |
name: unit-testing | |
on: [push] | |
jobs: | |
build: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
os: ['ubuntu-22.04'] | |
perl: [ '5.34' ] | |
#perl: [ '5.34', '5.32', '5.16.3' ] | |
name: Perl ${{ matrix.perl }} on ${{ matrix.os }} | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up perl | |
uses: shogo82148/actions-setup-perl@v1 | |
with: | |
perl-version: ${{ matrix.perl }} | |
install-modules-with: cpanm | |
install-modules-args: --with-develop --with-configure --force --no-test | |
- name: apt-get to prepare for cached perl packages | |
run: | | |
sudo apt-get update -y | |
sudo apt-get install -y sqlite3 libgd-dev libsqlite3-dev libberkeleydb-perl libcdb-file-perl | |
- name: cpanm installations hopefully cached | |
run: cpanm DBI DBI::SQLite JSON | |
# - name: apt-get | |
# run: | | |
# sudo apt-get update -y | |
# sudo apt-get install -y quicktree bioperl mash | |
# - name: cpanm installations | |
# run: cpanm --installdeps . | |
# - name: versions | |
# run: | | |
# mash --version | |
# quicktree -v | |
# sqlite3 --version | |
# - run: perl -V | |
# - name: perl modules checks | |
# run: | | |
# for i in Bio::Tree::Statistics threads Bio::Matrix::IO Bio::Tree::DistanceFactory; do perl -M$i -e 'print "checking module $i";'; done | |
# - name: make test | |
# run: perl Makefile.PL && make && make test |