Skip to content

perl_ci.yml: remove bio::kmer from cache #8

perl_ci.yml: remove bio::kmer from cache

perl_ci.yml: remove bio::kmer from cache #8

Workflow file for this run

# https://docs.github.com/en/actions/reference/workflow-syntax-for-github-actions
# https://docs.github.com/en/actions/guides/publishing-docker-images
# https://github.com/docker/build-push-action/blob/master/docs/advanced/share-image-jobs.md
name: unit-testing
on: [push]
jobs:
build:
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: ['ubuntu-22.04']
perl: [ '5.34' ]
#perl: [ '5.34', '5.32', '5.16.3' ]
name: Perl ${{ matrix.perl }} on ${{ matrix.os }}
steps:
- uses: actions/checkout@v3
- name: Set up perl
uses: shogo82148/actions-setup-perl@v1
with:
perl-version: ${{ matrix.perl }}
install-modules-with: cpanm
install-modules-args: --with-develop --with-configure --force --no-test
- name: apt-get to prepare for cached perl packages
run: |
sudo apt-get update -y
sudo apt-get install -y sqlite3 libgd-dev libsqlite3-dev libberkeleydb-perl libcdb-file-perl
- name: cpanm installations hopefully cached
run: cpanm DBI DBI::SQLite JSON
# - name: apt-get
# run: |
# sudo apt-get update -y
# sudo apt-get install -y quicktree bioperl mash
# - name: cpanm installations
# run: cpanm --installdeps .
# - name: versions
# run: |
# mash --version
# quicktree -v
# sqlite3 --version
# - run: perl -V
# - name: perl modules checks
# run: |
# for i in Bio::Tree::Statistics threads Bio::Matrix::IO Bio::Tree::DistanceFactory; do perl -M$i -e 'print "checking module $i";'; done
# - name: make test
# run: perl Makefile.PL && make && make test