add simulation functions

lipingshu · Dec 6, 2023 · 83077cd · 83077cd
1 parent 8483827
commit 83077cd
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Showing 17 changed files with 203 additions and 49 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -13,7 +13,7 @@ License: `use_mit_license()`, `use_gpl3_license()` or friends to pick a
 Encoding: UTF-8
 LazyData: true
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.1.1
+RoxygenNote: 7.2.3
 Depends: 
     R (>= 4.0)
 Imports:
@@ -25,4 +25,3 @@ Imports:
 	biclust,
 	stats,
 	Matrix (>= 1.5)
-
diff --git a/NAMESPACE b/NAMESPACE
@@ -11,3 +11,7 @@ export(RunDM)
 export(coarse.grain)
 export(diffusion.map)
 export(get.RW.matrix)
+export(simulate_bifurcation)
+export(simulate_cyclic)
+export(simulate_cylinder)
+export(simulate_linear)
diff --git a/man/AddGeneBinScore.Rd b/man/AddGeneBinScore.Rd
diff --git a/man/CoarseGrain.Rd b/man/CoarseGrain.Rd
diff --git a/man/ExtractGeneTrajectory.Rd b/man/ExtractGeneTrajectory.Rd
diff --git a/man/GetGeneEmbedding.Rd b/man/GetGeneEmbedding.Rd
diff --git a/man/GetGenePseudoorder.Rd b/man/GetGenePseudoorder.Rd
diff --git a/man/GetGraphDistance.Rd b/man/GetGraphDistance.Rd
diff --git a/man/LoadGeneDistMat.Rd b/man/LoadGeneDistMat.Rd
diff --git a/man/RunDM.Rd b/man/RunDM.Rd
diff --git a/man/coarse.grain.Rd b/man/coarse.grain.Rd
diff --git a/man/diffusion.map.Rd b/man/diffusion.map.Rd
diff --git a/man/get.RW.matrix.Rd b/man/get.RW.matrix.Rd
diff --git a/man/simulate_bifurcation.Rd b/man/simulate_bifurcation.Rd
diff --git a/man/simulate_cyclic.Rd b/man/simulate_cyclic.Rd
diff --git a/man/simulate_cylinder.Rd b/man/simulate_cylinder.Rd
diff --git a/man/simulate_linear.Rd b/man/simulate_linear.Rd