Some bio utilities I did for a code test. Hopefully these can help others in the bio field work with their data.
##fastq.sh A simple bash script to read files with a fasq extension and do some counting on string length.
To run fastq:
run "chmod +x fastq.sh", and then "./fastq.sh"
##fasta.sh A bash script to read a passed file name and count the 10 most frequent sequences.
To run fasta:
run "chmod +x fastq.sh", and then "./fastq.sh /path/to/my/data/file"
##chromosome.py A python script to lookup chromosome coordinates and match it's annotation from a second file. Outputs a file with the combined match.
To run chromosome.py:
Modify chromeosome.py to point to correct file paths.
run "python chromosome.py"