add anndata-zarr #146
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| name: Continuous integration | |
| on: [push, pull_request] | |
| jobs: | |
| build_and_test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions-rs/toolchain@v1 | |
| with: | |
| profile: minimal | |
| toolchain: nightly | |
| override: true | |
| - name: Install dependency | |
| run: | | |
| sudo pip install --upgrade pip | |
| pip install --user Pygments==2.6.1 sphinx==4.4.0 pandoc nbsphinx \ | |
| sphinx-autodoc-typehints sphinx_rtd_theme \ | |
| markupsafe==2.0.1 | |
| - name: Build and test package | |
| run: | | |
| cd ${GITHUB_WORKSPACE}/anndata-hdf5 && cargo test --all --no-fail-fast | |
| cd ${GITHUB_WORKSPACE}/anndata && cargo test --all --no-fail-fast | |
| cd ${GITHUB_WORKSPACE}/python && pip install --user .[test] | |
| pytest ${GITHUB_WORKSPACE}/python/tests | |
| - name: Build doc | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| sphinx-build ${GITHUB_WORKSPACE}/python/docs _build/html | |
| - name: Upload doc | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: documentation | |
| path: ./_build/html | |
| upload_gh-page: | |
| #if: startsWith(github.ref, 'refs/tags/v') | |
| name: Publish | |
| runs-on: ubuntu-latest | |
| needs: [build_and_test] | |
| steps: | |
| - name: Download | |
| uses: actions/download-artifact@v2 | |
| - name: Upload doc | |
| uses: peaceiris/actions-gh-pages@v3 | |
| if: ${{ github.ref == 'refs/heads/main' }} | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: ./documentation | |
| publish_branch: gh-pages | |
| force_orphan: true |