update nightly build

.github/workflows/nightly.yml

@@ -38,4 +38,5 @@ jobs:
     if : ${{ needs.check-for-new-commits.outputs.NEW_COMMITS == 'true' }}
     uses: kaizhang/SnapATAC2/.github/workflows/wheels.yml@main
     with:
-      wheel: 'true'
+      wheel: 'true'
+      nightly: 'true'

.github/workflows/wheels.yml

@@ -2,7 +2,6 @@
 # It will build a Python project using CIBW, then upload the wheel and source
 # distribution to PyPI.
 name: build-wheels
-
 on:
   push:
 
@@ -11,6 +10,9 @@ on:
       wheel:
         required: false
         type: string
+      nightly:
+        required: false
+        type: string
 jobs:
   build_wheels:
     name: Wheel on ${{ matrix.os }} for ${{ matrix.python_version }}
@@ -60,7 +62,7 @@ jobs:
   make_sdist:
     name: Build source distribution
     runs-on: ubuntu-latest
-    if: ${{ startsWith(github.ref, 'refs/tags/') }}
+    if: ${{ startsWith(github.ref, 'refs/tags/') }} || inputs.nightly
     steps:
       - uses: actions/checkout@v3
 
@@ -81,17 +83,41 @@ jobs:
         with:
           path: snapatac2-python/dist/*.tar.gz
 
-  upload_all:
+  publish:
     needs: [build_wheels, make_sdist]
     runs-on: ubuntu-latest
-    if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags')
+    if: (github.event_name == 'push' && startsWith(github.ref, 'refs/tags')) || inputs.nightly
     steps:
+    - uses: actions/checkout@v4
+
+    - name: Delete Release
+      if: inputs.nightly
+      env:
+        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+      run: |
+        if gh release view nightly > /dev/null 2>&1; then
+          gh release delete nightly -y --cleanup-tag
+        fi
+
     - uses: actions/download-artifact@v3
       with:
         name: artifact
         path: dist
 
-    - uses: pypa/[email protected]
+    - name: Publish to PyPI
+      uses: pypa/[email protected]
+      if: startsWith(github.ref, 'refs/tags')
       with:
         user: __token__
-        password: ${{ secrets.pypi_password }}
+        password: ${{ secrets.pypi_password }}
+
+    - name: Create nightly release
+      uses: ncipollo/release-action@v1
+      if: inputs.nightly
+      with:
+        allowUpdates: true
+        tag: nightly
+        name: Nightly Release
+        prerelease: true
+        removeArtifacts: true
+        artifacts: "dist/*.whl,dist/*.tar.gz"

docs/install.md

@@ -35,13 +35,12 @@ The nightly build is the build from the latest source codes, which includes the
 latest features, enhancements, and bug fixes that haven't been released. 
 The nightly build can be unstable and include some untested features.
 
-After downloading the
-{download}`Nightly Build <https://nightly.link/kaizhang/SnapATAC2/workflows/nightly.yml/main/artifact.zip>`,
-unzip it and then select the appropriate wheel file for your platform and use `pip install` to install it.
+You need to download the appropriate
+{download}`wheel file <https://github.com/kaizhang/SnapATAC2/releases/tag/nightly>`
+for your platform and use `pip install` to install it.
 For example, if you are using a Linux system with Python 3.8, you can use the following command to install it:
 
 ```
-unzip artifact.zip
 pip install snapatac2-x.x.x-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
 ```