The scripts in this repository aim to provide a clean way of visualizing and comparing client and partners sleep and activity patterns. It is part my entry for the Actigraphy Data Visualization and Analysis Challenge that is part of the PoLNet3 workshop.
The main data used to plot actograms are the 'interval status' classification provided by the ActiWatch. The output from the main script is two PDF files, one containing actograms for clients and the other containing actograms for partners.
Data from the following data set must be extracted in the data folder.
Angelova, M., Kusmakar, S., Karmakar, C., Zhu, Z., Shelyag, S., Drummond, S., & Ellis, J. (2021). Chronic insomnia and bed partner actigraphy data [Data set]. https://doi.org/10.5061/dryad.b8gtht7bh
In the actograms we plotted only clients that had corresponding bed partners and vice-versa. We plotted 7 days of data for each individual, discarding the first day of recording.
Downloaded data must be extracted in the data folder. Client and partner data must be in the paths:
- Clients:
data/Supplementary Material_Final/Data/CLIENT - Partners:
data/Supplementary Material_Final/Data/PARTNER
With the data in place one can open the RStudio project actigraphy-viz-challenge.Rproj and run the actograms.R in the code folder. The script's output will be saved to the output folder in PDF format.
Visualization was done by J.T. Silvério with data from Angelova et al. (2021). Contact at jt.silverio[at]usp.br