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[docker] add docker images for local testing
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FROM rocker/r-ver:4.2.3 | ||
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ARG RENV_CONFIG_EXTERNAL_LIBRARIES="/usr/local/lib/R/library" | ||
ARG RUN_PYTHON_CONFIG_TESTS=true | ||
ENV RUN_PYTHON_CONFIG_TESTS=$RUN_PYTHON_CONFIG_TESTS | ||
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# before script | ||
RUN apt-get update && apt-get upgrade -y | ||
RUN apt-get install -y git | ||
# Required for building python and rhdf5 | ||
RUN apt-get update && apt-get upgrade -y | ||
RUN apt-get install -y git | ||
RUN apt-get install -y build-essential libssl-dev zlib1g-dev libbz2-dev \ | ||
libreadline-dev libsqlite3-dev curl libncursesw5-dev xz-utils tk-dev \ | ||
libxml2-dev libxmlsec1-dev libffi-dev liblzma-dev \ | ||
libharfbuzz-dev libfribidi-dev libcurl4-openssl-dev \ | ||
libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev | ||
RUN apt-get install -y python3.10-venv python3-pip | ||
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#RUN git clone --branch 90-add_fun_install_ogs https://gitlab.opengeosys.org/ogs/tools/r2ogs6.git /root/r2ogs6 | ||
COPY .. /root/r2ogs6 | ||
RUN rm /root/r2ogs6/.Renviron | ||
RUN rm /root/r2ogs6/.Rprofile | ||
RUN mkdir /root/test_r2ogs6 | ||
WORKDIR /root/test_r2ogs6 | ||
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# script | ||
RUN R -e 'install.packages(c("remotes", "BiocManager"))' | ||
RUN R -e 'remotes::install_local(path="/root/r2ogs6", dependencies="Imports", repos=BiocManager::repositories())' | ||
RUN R -e 'reticulate::virtualenv_create(envname="r2ogs6", python="/usr/bin/python3")' | ||
RUN R -e 'r2ogs6::install_ogs(ogs_version = "6.4.4", envname = "r2ogs6")' | ||
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FROM rocker/r-ver:4.2.3 | ||
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ARG RUN_PYTHON_CONFIG_TESTS=true | ||
ENV RUN_PYTHON_CONFIG_TESTS=$RUN_PYTHON_CONFIG_TESTS | ||
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# Set RENV_CONFIG_EXTERNAL_LIBRARIES to consider to R system lib | ||
ARG RENV_CONFIG_EXTERNAL_LIBRARIES="/usr/local/lib/R/library" | ||
# Define renv lib | ||
ARG RENV_PATHS_LIBRARY=/root/.cache/R/renv/library | ||
ENV RENV_PATHS_LIBRARY=$RENV_PATHS_LIBRARY | ||
ARG RENV_PATHS_CACHE=/root/.cache/R/renv/cache | ||
ENV RENV_PATHS_CACHE=$RENV_PATHS_CACHE | ||
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# before script | ||
RUN apt-get update && apt-get upgrade -y | ||
RUN apt-get install -y git | ||
RUN apt-get install -y build-essential libssl-dev zlib1g-dev libbz2-dev \ | ||
libreadline-dev libsqlite3-dev curl libncursesw5-dev xz-utils tk-dev \ | ||
libxml2-dev libxmlsec1-dev libffi-dev liblzma-dev \ | ||
libharfbuzz-dev libfribidi-dev libcurl4-openssl-dev \ | ||
libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev | ||
RUN apt-get install -y python3.10-venv python3-pip | ||
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#RUN rm .Rprofile | ||
RUN R -e "install.packages('renv', repos = c(CRAN = 'https://cloud.r-project.org'))" | ||
COPY .. /root/r2ogs6 | ||
RUN rm /root/r2ogs6/.Renviron | ||
WORKDIR /root/r2ogs6 | ||
RUN ls -ahl . | ||
RUN echo $R_LIBS | ||
RUN R -e "renv::restore()" | ||
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ENV R_LIBS=/usr/local/lib/R/site-library:/usr/local/lib/R/library:$RENV_PATHS_LIBRARY | ||
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# # script | ||
RUN R -e "devtools::test()" | ||
RUN R -e "devtools::check(vignettes=F)" | ||
# using of devtools as R CMD could not access renv library, dunno why | ||
# RUN R CMD build . --no-manual --no-build-vignettes | ||
# RUN R CMD check $(ls -1t *.tar.gz | head -n 1) --no-manual --no-build-vignettes | ||
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# # after script | ||
RUN R -e 'renv::install("covr")' | ||
RUN R -e 'covr::package_coverage(type = c("tests", "examples"), quiet = F)' |