Releases: jlab/fold-grammars
Releases · jlab/fold-grammars
additional fixes for bioconda distribution
- flag glasgow-ext is no longer supported in OSX
- seems like BusyBox v1.36.1's readlink does not have a -m option
Fix debian dependencies and avoid gcc use at runtime
Updated energy parameters to ViennaRNA 2.5.1
- underlying bellman's GAPc was updated such that
- thermodynamic parameters where updated to be en par with ViennaRNA 2.5.1
- mk_pf() and scale() repretitive computation is cached to speed up probability computations, thanks @fymue !
adapted energy parameter fix from ViennaRNA
- fixing a bug with latest gcc version regarding definition of openParen and closeParen pre-definitions leading to segfaults for whatever input. Thanks Vincent von Schelm for bringing this to my attention!
- raising a warning about potential errors in free energy computation when using macrostate and energy parameters that violate the assumption that dl_energy + dr_energy == ext_mismatch_energy (this was true for Turner1999, but is no longer in Turner2004). See: #26
- using a non deprecated method for number rounding, thus preventing multiple warnings to bug the user in front ends
- raising a warning about potentially wrong energy computation if a) in alignment mode and b) in window mode. See: jlab/gapc#79
stable release for bioconda
Merge pull request #7 from jlab/fix_stefanstyletests Fix stefanstyletests