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  1. eqtl-intro eqtl-intro Public

    An introductory course to eQTL analysis.

    HTML 8 6

  2. SepstratifieR SepstratifieR Public

    Stratification of infectious disease patients by gene expression profile

    R 6 3

  3. AltHapAlignR AltHapAlignR Public

    R 5

  4. impute-tools impute-tools Public

    Scripts to facilitate imputation of genotypes and subsequent QC.

    Perl 4 5

  5. mirna_pipeline mirna_pipeline Public

    bioinformatics pipeline to analyze micro RNA sequencing data

    R 4 3

  6. ATACseq_pipeline ATACseq_pipeline Public

    Shell 4 3

Repositories

Showing 10 of 28 repositories
  • DESeq2-Tutorial Public
    jknightlab/DESeq2-Tutorial’s past year of commit activity
    HTML 0 1 0 0 Updated Oct 22, 2024
  • TAPS-pipeline Public

    Codes for processing of methylation data generated using the TAPS method

    jknightlab/TAPS-pipeline’s past year of commit activity
    Shell 2 0 0 0 Updated Oct 11, 2024
  • ONT-methylation-pipeline Public

    Codes used for analysing sequencing data and modified base information derived using ONT

    jknightlab/ONT-methylation-pipeline’s past year of commit activity
    Shell 0 1 0 0 Updated Jul 19, 2024
  • ICeCAP Public Forked from gabriele2017/ICeCAP

    Fork of Gabriele's ICeCAP pipeline for reference in the jknightlab GitHub

    jknightlab/ICeCAP’s past year of commit activity
    C 0 1 0 0 Updated Mar 22, 2023
  • Enhancer-RNA Public
    jknightlab/Enhancer-RNA’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Nov 3, 2022
  • Sample-identity-CHECK Public
    jknightlab/Sample-identity-CHECK’s past year of commit activity
    Shell 0 0 0 0 Updated Nov 2, 2022
  • SepstratifieR Public

    Stratification of infectious disease patients by gene expression profile

    jknightlab/SepstratifieR’s past year of commit activity
    R 6 3 0 0 Updated Sep 14, 2022
  • SepstratifieR-paper_Sci-Trans-Med_2022 Public

    This repository contains all the codes associated with the paper "An immune dysfunction score for stratification of patients with acute infection based on whole blood gene expression" by Cano-Gamez et al.

    jknightlab/SepstratifieR-paper_Sci-Trans-Med_2022’s past year of commit activity
    0 0 0 0 Updated Sep 14, 2022
  • AltHapAlignR Public
    jknightlab/AltHapAlignR’s past year of commit activity
    R 5 0 1 0 Updated Sep 11, 2019
  • Abu-Dhabi Public

    Abu Dhabi population genetics and T2D/metformin RNAseq

    jknightlab/Abu-Dhabi’s past year of commit activity
    R 1 0 0 0 Updated Dec 19, 2018
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