add decoded flags to node summary lines

Closes #393

sc2ts/info.py

@@ -757,16 +757,11 @@ def _node_summary(self, u, child_mutations=True):
             strain = md["strain"]
         else:
             md = md["sc2ts"]
-            if flags == 1 << 21:
+            if flags & (core.NODE_IS_MUTATION_OVERLAP | core.NODE_IS_REVERSION_PUSH) > 0:
                 try:
-                    strain = f"O{md['date_added']} {','.join(md['mutations'])}"
+                    strain = f"{md['date_added']}:{', '.join(md['mutations'])}"
                 except KeyError:
-                    strain = "Overlap debug missing"
-            elif flags == 1 << 22:
-                try:
-                    strain = f"P{md['date_added']} {','.join(md['mutations'])}"
-                except KeyError:
-                    strain = "Push debug missing"
+                    strain = "debug missing"
             elif "group_id" in md:
                 strain = md["group_id"]
 
@@ -782,6 +777,7 @@ def _node_summary(self, u, child_mutations=True):
 
         return {
             "node": u,
+            "flags": core.flags_summary(flags),
             "strain": strain,
             "pango": pango,
             "parents": np.sum(self.ts.edges_child == u),

tests/test_info.py

@@ -231,6 +231,18 @@ def test_samples_summary(self, fx_ti_2020_02_13):
         assert np.all(df["total"] >= (df["inserted"] + df["exact_matches"]))
         assert df.shape[0] > 0
 
+    def test_node_summary(self, fx_ti_2020_02_13):
+        ti = fx_ti_2020_02_13
+        for u in range(ti.ts.num_nodes):
+            d = ti._node_summary(u)
+            assert d["node"] == u
+            assert len(d["flags"]) == 10
+
+    def test_node_report(self, fx_ti_2020_02_13):
+        ti = fx_ti_2020_02_13
+        report = ti.node_report(strain="SRR11597190")
+        assert len(report) > 0
+
 
 class TestSampleGroupInfo:
     def test_draw_svg(self, fx_ti_2020_02_13):