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@isb-cgc

ISB Cancer Gateway in the Cloud

The ISB-CGC is providing access to TCGA data and computation on the Google Cloud Platform.

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  1. examples-Python examples-Python Public

    Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.

    Jupyter Notebook 54 17

  2. examples-R examples-R Public

    Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.

    HTML 31 15

  3. ISB-CGC-Webapp ISB-CGC-Webapp Public

    ISB CGC Webapp

    JavaScript 12 9

  4. ISB-CGC-pipelines ISB-CGC-pipelines Public

    Framework for running bioinformatic workflows and pipelines using the Google Pipelines API as the underlying task-runner.

    Python 12 6

  5. readthedocs readthedocs Public

    Documentation for the ISB-CGC on Read the Docs.

    Python 10 16

  6. Community-Notebooks Community-Notebooks Public

    Jupyter Notebook 9 2

Repositories

Showing 10 of 36 repositories
  • BigQueryTableSearch Public

    Standalone Big Query Table Search System

    isb-cgc/BigQueryTableSearch’s past year of commit activity
    HTML 0 Apache-2.0 0 0 0 Updated Oct 24, 2024
  • readthedocs Public

    Documentation for the ISB-CGC on Read the Docs.

    isb-cgc/readthedocs’s past year of commit activity
    Python 10 Apache-2.0 16 1 1 Updated Oct 23, 2024
  • BQEcosystem Public

    BQ Table descriptions/schema and installation scripts

    isb-cgc/BQEcosystem’s past year of commit activity
    Shell 0 3 2 0 Updated Oct 23, 2024
  • NextGenETL Public

    ETL Processes and Scripts (2019)

    isb-cgc/NextGenETL’s past year of commit activity
    Python 3 4 0 3 Updated Oct 23, 2024
  • ISB-CGC-API Public

    Google Endpoints API Used to Drive CGC Webapp

    isb-cgc/ISB-CGC-API’s past year of commit activity
    Python 2 Apache-2.0 3 0 0 Updated Oct 17, 2024
  • ISB-CGC-Common Public

    Shared code between repositories

    isb-cgc/ISB-CGC-Common’s past year of commit activity
    Python 2 4 0 0 Updated Oct 11, 2024
  • ISB-CGC-Webapp Public

    ISB CGC Webapp

    isb-cgc/ISB-CGC-Webapp’s past year of commit activity
    JavaScript 12 Apache-2.0 9 4 0 Updated Oct 11, 2024
  • cananolab Public Forked from CBIIT/cananolab

    caNanoLab is a web-based portal designed to capture nanotechnology data.

    isb-cgc/cananolab’s past year of commit activity
    JavaScript 1 6 0 2 Updated Oct 10, 2024
  • isb-cgc/ISB-CGC-Demos’s past year of commit activity
    Jupyter Notebook 3 0 0 0 Updated Oct 4, 2024
  • bq-search-cron Public

    Cron job to keep BQ Search current

    isb-cgc/bq-search-cron’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Oct 2, 2024

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