SAGApipeline

The goal of the Standard Algal Genome Annotation pipeline is to provide a reproducible, rolling update annotation pipeline for algal genome annotation.

This repository provides the basic code for data curation and SAGA is under development.

Name		Name	Last commit message	Last commit date
Latest commit History 41 Commits
.vscode		.vscode
Table		Table
past_archive		past_archive
test		test
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md
ass_jobs_stat.py		ass_jobs_stat.py
ass_pred_analysis.py		ass_pred_analysis.py
assembly_stat.py		assembly_stat.py
busco_analysis.py		busco_analysis.py
busco_resolver.py		busco_resolver.py
calculate_specificity_noanno.py		calculate_specificity_noanno.py
calculate_specificity_refseq.py		calculate_specificity_refseq.py
diamond_tsv_resolver.py		diamond_tsv_resolver.py
environment.yml		environment.yml
es_fiducial.py		es_fiducial.py
gen_SF1.py		gen_SF1.py
gen_SF3.py		gen_SF3.py
gen_fig2.R		gen_fig2.R
gen_tableS1.py		gen_tableS1.py
header_fix.py		header_fix.py
ncbi_datasets_resolver.py		ncbi_datasets_resolver.py
noanno_specificity_result.txt		noanno_specificity_result.txt
nr_extract.py		nr_extract.py
pr_header_fix.py		pr_header_fix.py
prediction_stat.py		prediction_stat.py
release_extract.py		release_extract.py
result_optimize.py		result_optimize.py
select_ass_to_lineage.py		select_ass_to_lineage.py

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Repository files navigation

SAGApipeline

About

Releases

Packages

Languages

License

inspirewind/SAGApipeline

Folders and files

Latest commit

History

Repository files navigation

SAGApipeline

About

Topics

Resources

License

Stars

Watchers

Forks

Releases

Packages 0

Languages

Packages