Regenerate notebook content

We fixed a duplicating stdout and stderr in commit d99fcf0 thus we need to recreate the notebook outputs.
imagej · Aug 8, 2023 · c5214a0 · c5214a0
1 parent e50446e
commit c5214a0
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Showing 10 changed files with 237 additions and 371 deletions.
diff --git a/doc/01-Starting-PyImageJ.ipynb b/doc/01-Starting-PyImageJ.ipynb
@@ -85,6 +85,13 @@
    "execution_count": 2,
    "metadata": {},
    "outputs": [
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Operating in headless mode - the original ImageJ will have limited functionality.\n"
+     ]
+    },
     {
      "name": "stdout",
      "output_type": "stream",
@@ -133,7 +140,7 @@
     {
      "data": {
       "text/plain": [
-       "'ImageJ2 2.14.0/1.54f; Java 11.0.15-internal [amd64]; 43MB of 7952MB'"
+       "'ImageJ2 2.14.0/1.54f; Java 11.0.15-internal [amd64]; 35MB of 7952MB'"
       ]
      },
      "execution_count": 3,

diff --git a/doc/02-Working-with-Java-classes-and-Python.ipynb b/doc/02-Working-with-Java-classes-and-Python.ipynb
diff --git a/doc/04-Retrieving-Data-from-Java.ipynb b/doc/04-Retrieving-Data-from-Java.ipynb
diff --git a/doc/06-Working-with-Images.ipynb b/doc/06-Working-with-Images.ipynb
@@ -62,13 +62,6 @@
      "text": [
       "[INFO] Populating metadata\n"
      ]
-    },
-    {
-     "name": "stderr",
-     "output_type": "stream",
-     "text": [
-      "[java.lang.Enum.toString] [INFO] Populating metadata\n"
-     ]
     }
    ],
    "source": [
@@ -316,7 +309,7 @@
     {
      "data": {
       "application/vnd.jupyter.widget-view+json": {
-       "model_id": "5a132864f2a64da3be68ee7dff2d46df",
+       "model_id": "622fc41961534cc78efdd938b438a324",
        "version_major": 2,
        "version_minor": 0
       },
@@ -357,7 +350,7 @@
     {
      "data": {
       "application/vnd.jupyter.widget-view+json": {
-       "model_id": "9fd39d47037b4ed0ae6cc7648b216983",
+       "model_id": "458f14cdc0864b3f9cfd5e7a300d17cd",
        "version_major": 2,
        "version_minor": 0
       },
@@ -405,7 +398,7 @@
     {
      "data": {
       "text/plain": [
-       "Viewer(camera=Camera(center=(0.0, 203.5, 202.5), zoom=1.2222956598369685, angles=(0.0, 0.0, 90.0), perspective=0.0, mouse_pan=True, mouse_zoom=True), cursor=Cursor(position=(1.0, 1.0), scaled=True, size=1, style=<CursorStyle.STANDARD: 'standard'>), dims=Dims(ndim=2, ndisplay=2, last_used=0, range=((0.0, 408.0, 1.0), (0.0, 406.0, 1.0)), current_step=(203, 202), order=(0, 1), axis_labels=('0', '1')), grid=GridCanvas(stride=1, shape=(-1, -1), enabled=False), layers=[<Image layer 'Image' at 0x7fd36a974100>], help='use <2> for transform', status='Ready', tooltip=Tooltip(visible=False, text=''), theme='dark', title='napari', mouse_over_canvas=False, mouse_move_callbacks=[], mouse_drag_callbacks=[], mouse_double_click_callbacks=[], mouse_wheel_callbacks=[<function dims_scroll at 0x7fd397c19120>], _persisted_mouse_event={}, _mouse_drag_gen={}, _mouse_wheel_gen={}, keymap={})"
+       "Viewer(camera=Camera(center=(0.0, 203.5, 202.5), zoom=1.2222956598369685, angles=(0.0, 0.0, 90.0), perspective=0.0, mouse_pan=True, mouse_zoom=True), cursor=Cursor(position=(1.0, 1.0), scaled=True, size=1, style=<CursorStyle.STANDARD: 'standard'>), dims=Dims(ndim=2, ndisplay=2, last_used=0, range=((0.0, 408.0, 1.0), (0.0, 406.0, 1.0)), current_step=(203, 202), order=(0, 1), axis_labels=('0', '1')), grid=GridCanvas(stride=1, shape=(-1, -1), enabled=False), layers=[<Image layer 'Image' at 0x7f3f6dd9c490>], help='use <2> for transform', status='Ready', tooltip=Tooltip(visible=False, text=''), theme='dark', title='napari', mouse_over_canvas=False, mouse_move_callbacks=[], mouse_drag_callbacks=[], mouse_double_click_callbacks=[], mouse_wheel_callbacks=[<function dims_scroll at 0x7f3f9ad10ee0>], _persisted_mouse_event={}, _mouse_drag_gen={}, _mouse_wheel_gen={}, keymap={})"
       ]
      },
      "execution_count": 13,

diff --git a/doc/07-Running-Macros-Scripts-and-Plugins.ipynb b/doc/07-Running-Macros-Scripts-and-Plugins.ipynb
@@ -65,13 +65,6 @@
       "[INFO] script:macro.ijm = [[greeting], [Hello Chuckles. You are 13 years old, and live in Nowhere.]]\n",
       "Hello Chuckles. You are 13 years old, and live in Nowhere.\n"
      ]
-    },
-    {
-     "name": "stderr",
-     "output_type": "stream",
-     "text": [
-      "[java.lang.Enum.toString] [INFO] script:macro.ijm = [[greeting], [Hello Chuckles. You are 13 years old, and live in Nowhere.]]\n"
-     ]
     }
    ],
    "source": [
@@ -132,13 +125,6 @@
       "17      sumOfSquares       26955832100.0\n",
       "18          variance         46033.94203\n"
      ]
-    },
-    {
-     "name": "stderr",
-     "output_type": "stream",
-     "text": [
-      "[java.lang.Enum.toString] [INFO] stats = [[geometricMean, harmonicMean, kurtosis, max, mean, median, min, moment1AboutMean, moment2AboutMean, moment3AboutMean, moment4AboutMean, size, skewness, stdDev, sum, sumOfInverses, sumOfLogs, sumOfSquares, variance], [595.4414497753899, 577.0396027150354, 29.15435353004105, 5312.0, 620.693248, 533.0, 329.0, 3.836939868051558E-12, 46033.20548721019, 3.4518346475241706E7, 6.17816849886094E10, 62500.0, 3.4948837458522295, 214.55521907025008, 3.8793328E7, 108.31145679764538, 399331.44142784143, 2.69558321E10, 46033.94203028317]]\n"
-     ]
     }
    ],
    "source": [
@@ -250,14 +236,7 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "[INFO] blobs.gif = net.imagej.display.DefaultDatasetView@a323a5b\n"
-     ]
-    },
-    {
-     "name": "stderr",
-     "output_type": "stream",
-     "text": [
-      "[java.lang.Enum.toString] [INFO] blobs.gif = net.imagej.display.DefaultDatasetView@a323a5b\n"
+      "[INFO] blobs.gif = net.imagej.display.DefaultDatasetView@4e4f4092\n"
      ]
     },
     {