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Merge pull request #37 from ihmeuw/bug/pin_pymc_version
BUG: pin PyMC to old version
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:target: https://travis-ci.org/ihmeuw/dismod_mr | ||
:alt: Latest Version | ||
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============ | ||
Introduction | ||
============ | ||
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This project is the descriptive epidemiological meta-regression tool, | ||
DisMod-MR, which grew out of the Global Burden of Disease (GBD) Study | ||
2010. DisMod-MR has been developed for the Institute of Health | ||
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@@ -27,11 +23,11 @@ Dismod MR requires PyMC2 which does not play nicely with normal Python | |
installation tools. Fortunately, ``conda`` has solved this issue for us. | ||
So first you'll need to setup a conda environment | ||
(after `installing conda, if necessary <https://docs.conda.io/projects/conda/en/latest/user-guide/install/>`_) | ||
and install ``pymc``. Then you can install ``dismod_mr`` using ``pip``. | ||
and install ``pymc`` version ``2.3.8``. Then you can install ``dismod_mr`` using ``pip``. | ||
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.. code-block:: sh | ||
conda create --name=dismod_mr python=3.6 pymc | ||
conda create --name=dismod_mr python=3.6 pymc==2.3.8 | ||
conda activate dismod_mr | ||
pip install dismod_mr | ||
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@@ -61,12 +57,23 @@ package index. | |
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.. code-block:: sh | ||
conda create --name=dismod_mr python=3.6 pymc | ||
conda create --name=dismod_mr python=3.6 pymc==2.3.8 | ||
conda activate dismod_mr | ||
git clone [email protected]:ihmeuw/dismod_mr.git | ||
cd dismod_mr | ||
pip install -e . | ||
To test this, you can use ``pytest``, which you must first install. | ||
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.. code-block:: sh | ||
pip install pytest | ||
pytest | ||
If you have things setup right, this will still generate many | ||
warnings, but there should be no tests that produce failures or | ||
errors. | ||
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Coding Practices | ||
---------------- | ||
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