API Update

demo/cytoscape.js-layvo-master/.gitignore

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+node_modules
+bundle.js
+package-lock.json

demo/cytoscape.js-layvo-master/LICENSE

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+Copyright (c) 2018, iVis-at-Bilkent.
+
+Permission is hereby granted, free of charge, to any person obtaining a copy of
+this software and associated documentation files (the “Software”), to deal in
+the Software without restriction, including without limitation the rights to
+use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies
+of the Software, and to permit persons to whom the Software is furnished to do
+so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

demo/cytoscape.js-layvo-master/README.md

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+cytoscape-layvo
+================================================================================
+
+
+## Description
+
+Layout quality evaluation tool ([demo](https://iVis-at-Bilkent.github.io/cytoscape-layvo))
+
+## Dependencies
+
+ * Cytoscape.js ^3.2.0
+
+
+## Usage instructions
+
+Download the library:
+ * via npm: `npm install cytoscape-layvo`,
+ * via bower: `bower install cytoscape-layvo`, or
+ * via direct download in the repository (probably from a tag).
+
+Import the library as appropriate for your project:
+
+ES import:
+
+```js
+import cytoscape from 'cytoscape';
+import layvo from 'cytoscape-layvo';
+
+cytoscape.use( layvo );
+```
+
+CommonJS require:
+
+```js
+let cytoscape = require('cytoscape');
+let layvo = require('cytoscape-layvo');
+
+cytoscape.use( layvo ); // register extension
+```
+
+AMD:
+
+```js
+require(['cytoscape', 'cytoscape-layvo'], function( cytoscape, layvo ){
+  layvo( cytoscape ); // register extension
+});
+```
+
+Plain HTML/JS has the extension registered for you automatically, because no `require()` is needed.
+
+
+## API
+- `let api = cy.layvo('get')`: get the extension instance
+- `api.generalProperties()`: get general layout metrics
+- `api.generalProperties(nodes, edges)`: get general layout metrics for the given array of nodes and edges
+- `api.differenceMetrics(cy, cy2)`: get synchronized layout similarity metrics
+
+## Build targets
+
+* `npm run test` : Run Mocha tests in `./test`
+* `npm run build` : Build `./src/**` into `cytoscape-layvo.js`
+* `npm run watch` : Automatically build on changes with live reloading (N.b. you must already have an HTTP server running)
+* `npm run dev` : Automatically build on changes with live reloading with webpack dev server
+* `npm run lint` : Run eslint on the source
+
+N.b. all builds use babel, so modern ES features can be used in the `src`.
+
+
+## Publishing instructions
+
+This project is set up to automatically be published to npm and bower.  To publish:
+
+1. Build the extension : `npm run build:release`
+1. Commit the build : `git commit -am "Build for release"`
+1. Bump the version number and tag: `npm version major|minor|patch`
+1. Push to origin: `git push && git push --tags`
+1. Publish to npm: `npm publish .`
+1. If publishing to bower for the first time, you'll need to run `bower register cytoscape-layvo https://github.com/iVis-at-Bilkent/cytoscape-layvo.git`
+1. [Make a new release](https://github.com/iVis-at-Bilkent/cytoscape-layvo/releases/new) for Zenodo.

demo/cytoscape.js-layvo-master/bower.json

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+{
+  "name": "cytoscape-layvo",
+  "description": "Layout quality evaluation tool",
+  "main": "cytoscape-layvo.js",
+  "dependencies": {
+    "cytoscape": "^3.2.0"
+  },
+  "repository": {
+    "type": "git",
+    "url": "https://github.com/iVis-at-Bilkent/cytoscape-layvo.git"
+  },
+  "ignore": [
+    "**/.*",
+    "node_modules",
+    "bower_components",
+    "test",
+    "tests"
+  ],
+  "keywords": [
+    "cytoscape",
+    "cytoscape-extension"
+  ],
+  "license": "MIT"
+}