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Update README.md with links to celltyping
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mistrm82 authored Aug 2, 2024
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Expand Up @@ -146,6 +146,13 @@ We have covered the analysis steps in quite a bit of detail for scRNA-seq explor
* Using RStudio on O2
* [HMSRC wiki page](https://harvardmed.atlassian.net/wiki/spaces/O2/pages/1623425967/RStudio+on+O2)
* [HBC RStudio on O2 tutorial](https://hbctraining.github.io/Intro-to-Unix-QMB/lessons/R_studio_on_02.html)

### Cell type annotation
- Databases with markers for manual annotation
- [CellMarker 2.0](http://bio-bigdata.hrbmu.edu.cn/CellMarker/)
- Cell type signature gene sets from [MSigDb](https://www.gsea-msigdb.org/gsea/msigdb/human/genesets.jsp?collection=C8)
- Reference-based automated celltype annotation
- [Azimuth](https://azimuth.hubmapconsortium.org/)


### Highlighted papers
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