Releases: hartwigmedical/hmftools
Releases · hartwigmedical/hmftools
compar v1.3-beta.1
Description of release compar v1.3-beta.1
What's Changed
- DEV-3784: Add liftover for somatic disruptions and germline variants and disruptions.
- Make compatible with Cuppa v2.
- DEV-4061: Add many fields and new categories: PEACH, VIRUS, TUMOR_FLAGSTAT, GERMLINE_FLAGSTAT, TUMOR_BAM_METRICS, GERMLINE_BAM_METRICS, SNP_GENOTYPE.
- Removed support for old format germline SV file.
- Adjusted disruption comparison to be less dependent on exact position.
- DEV-4082: Create INVALID_ERROR output when error is thrown in comparison
- DEV-4084: Fix problems in disruption comparison
- Add categories: CDR3_SEQUENCE, CDR3_LOCUS_SUMMARY, TELOMERE_LENGTH
Full Changelog: compar-v1.2...compar-v1.3-beta.1
orange v3.7.1_beta
Description of release orange v3.7.1_beta
What's Changed
- ACTIN-292: Add Chromosomal Rearrangements by @cbruel in #612
- DEV-4083: Incorporate biallelic probability in Orange by @DFKoetsier in #615
Full Changelog: cuppa-v2.3.0_beta...orange-v3.7.1_beta
chord v2.1.0 beta
chord-v2.1.0_beta Chord: Implemented extractSigsSnv() R function in java
cuppa v2.3 beta
cuppa-v2.3.0_beta Cuppa: updated version to use latest SV factory
cuppa v2.2.1-beta.19
Description of release cuppa v2.2.1-beta.19
Full Changelog: cuppa-v2.2.1-beta.9...cuppa-v2.2.1-beta.19
cuppa v2.2.1-beta.18
Description of release cuppa v2.2.1-beta.18
Full Changelog: cuppa-v2.2.1-beta.10...cuppa-v2.2.1-beta.18
virus-interpreter v3.7 beta
virus-interpreter-v3.7_beta Version 3.7 beta
sage v4.0 beta
sage-v4.0_beta Version 4.0 beta
redux v1.0 beta
redux-v1.0_beta Version 1.0 beta
purple v4.1 beta
purple-v4.1_beta Version 4.1 beta