compar v1.3-beta.1

Description of release compar v1.3-beta.1

What's Changed

• DEV-3784: Add liftover for somatic disruptions and germline variants and disruptions.
• Make compatible with Cuppa v2.
• DEV-4061: Add many fields and new categories: PEACH, VIRUS, TUMOR_FLAGSTAT, GERMLINE_FLAGSTAT, TUMOR_BAM_METRICS, GERMLINE_BAM_METRICS, SNP_GENOTYPE.
• Removed support for old format germline SV file.
• Adjusted disruption comparison to be less dependent on exact position.
• DEV-4082: Create INVALID_ERROR output when error is thrown in comparison
• DEV-4084: Fix problems in disruption comparison
• Add categories: CDR3_SEQUENCE, CDR3_LOCUS_SUMMARY, TELOMERE_LENGTH

Full Changelog: compar-v1.2...compar-v1.3-beta.1

orange v3.7.1_beta

Description of release orange v3.7.1_beta

What's Changed

• ACTIN-292: Add Chromosomal Rearrangements by @cbruel in #612
• DEV-4083: Incorporate biallelic probability in Orange by @DFKoetsier in #615

Full Changelog: cuppa-v2.3.0_beta...orange-v3.7.1_beta

chord v2.1.0 beta

chord-v2.1.0_beta

Chord: Implemented extractSigsSnv() R function in java

cuppa v2.3 beta

cuppa-v2.3.0_beta

Cuppa: updated version to use latest SV factory

cuppa v2.2.1-beta.19

Description of release cuppa v2.2.1-beta.19

Full Changelog: cuppa-v2.2.1-beta.9...cuppa-v2.2.1-beta.19

cuppa v2.2.1-beta.18

Description of release cuppa v2.2.1-beta.18

Full Changelog: cuppa-v2.2.1-beta.10...cuppa-v2.2.1-beta.18

virus-interpreter v3.7 beta

virus-interpreter-v3.7_beta

Version 3.7 beta

sage v4.0 beta

sage-v4.0_beta

Version 4.0 beta

redux v1.0 beta

redux-v1.0_beta

Version 1.0 beta

purple v4.1 beta

purple-v4.1_beta

Version 4.1 beta