Fix linting

guerler · Oct 25, 2023 · 3803774 · 3803774
1 parent 1fc9086
commit 3803774
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Showing 4 changed files with 36 additions and 45 deletions.
diff --git a/lib/galaxy/managers/visualizations.py b/lib/galaxy/managers/visualizations.py
@@ -5,7 +5,6 @@
 reproduce a specific view in a Galaxy visualization.
 """
 import logging
-
 from typing import (
     Dict,
     List,
@@ -17,30 +16,25 @@
     or_,
     true,
 )
-from sqlalchemy.orm import (
-    aliased,
-)
+from sqlalchemy.orm import aliased
 
 from galaxy import (
     exceptions,
     model,
 )
-from galaxy.managers import (base, sharable)
+from galaxy.managers import (
+    base,
+    sharable,
+)
 from galaxy.managers.context import ProvidesUserContext
-
 from galaxy.model.index_filter_util import (
     append_user_filter,
     raw_text_column_filter,
     tag_filter,
     text_column_filter,
 )
-
-from galaxy.schema.visualization import (
-    VisualizationIndexQueryPayload,
-)
-
+from galaxy.schema.visualization import VisualizationIndexQueryPayload
 from galaxy.structured_app import MinimalManagerApp
-
 from galaxy.util.search import (
     FilteredTerm,
     parse_filters_structured,
@@ -188,17 +182,24 @@ def __init__(self, app: MinimalManagerApp):
         self.visualization_manager = self.manager
 
         self.default_view = "summary"
-        self.add_view("summary", [
-            "id",
-            "title",
-            "type",
-            "dbkey",
-        ])
-        self.add_view("detailed", [
-            "create_time",
-            "tags",
-            "update_time",
-        ], include_keys_from="summary",)
+        self.add_view(
+            "summary",
+            [
+                "id",
+                "title",
+                "type",
+                "dbkey",
+            ],
+        )
+        self.add_view(
+            "detailed",
+            [
+                "create_time",
+                "tags",
+                "update_time",
+            ],
+            include_keys_from="summary",
+        )
 
     def add_serializers(self):
         super().add_serializers()

diff --git a/lib/galaxy/schema/visualization.py b/lib/galaxy/schema/visualization.py
@@ -8,22 +8,17 @@
     Extra,
     Field,
 )
-from typing_extensions import (
-    Literal,
-)
+from typing_extensions import Literal
 
-from galaxy.schema.fields import (
-    DecodedDatabaseIdField,
-)
+from galaxy.schema.fields import DecodedDatabaseIdField
 from galaxy.schema.schema import (
     CreateTimeField,
-    TagCollection,
-    UpdateTimeField,
     Model,
     SharingStatus,
+    TagCollection,
+    UpdateTimeField,
 )
 
-
 VisualizationSortByEnum = Literal["create_time", "title", "update_time", "username"]
 
 
@@ -32,7 +27,9 @@ class VisualizationIndexQueryPayload(Model):
     show_published: Optional[bool] = None
     show_shared: Optional[bool] = None
     user_id: Optional[DecodedDatabaseIdField] = None
-    sort_by: VisualizationSortByEnum = Field("update_time", title="Sort By", description="Sort pages by this attribute.")
+    sort_by: VisualizationSortByEnum = Field(
+        "update_time", title="Sort By", description="Sort pages by this attribute."
+    )
     sort_desc: Optional[bool] = Field(default=True, title="Sort descending", description="Sort in descending order.")
     search: Optional[str] = Field(default=None, title="Filter text", description="Freetext to search.")
     limit: Optional[int] = Field(default=100, lt=1000, title="Limit", description="Maximum number of pages to return.")

diff --git a/lib/galaxy/webapps/galaxy/api/visualizations.py b/lib/galaxy/webapps/galaxy/api/visualizations.py
@@ -6,10 +6,7 @@
 """
 import json
 import logging
-
-from typing import (
-    Optional,
-)
+from typing import Optional
 
 from fastapi import (
     Body,
@@ -90,7 +87,9 @@
 
 ShowPublishedQueryParam: bool = Query(default=True, title="Include published visualizations.", description="")
 
-ShowSharedQueryParam: bool = Query(default=False, title="Include visualizations shared with authenticated user.", description="")
+ShowSharedQueryParam: bool = Query(
+    default=False, title="Include visualizations shared with authenticated user.", description=""
+)
 
 SortByQueryParam: VisualizationSortByEnum = Query(
     default="update_time",

diff --git a/lib/galaxy/webapps/galaxy/services/visualizations.py b/lib/galaxy/webapps/galaxy/services/visualizations.py
@@ -1,23 +1,18 @@
 import logging
-
 from typing import (
     Any,
     List,
     Tuple,
 )
 
 from galaxy import exceptions
-
 from galaxy.managers.notification import NotificationManager
 from galaxy.managers.visualizations import (
     VisualizationManager,
     VisualizationSerializer,
 )
+from galaxy.schema.visualization import VisualizationIndexQueryPayload
 from galaxy.security.idencoding import IdEncodingHelper
-
-from galaxy.schema.visualization import (
-    VisualizationIndexQueryPayload,
-)
 from galaxy.webapps.galaxy.services.base import ServiceBase
 from galaxy.webapps.galaxy.services.sharable import ShareableService
 
@@ -51,7 +46,6 @@ def index(
         payload: VisualizationIndexQueryPayload,
         detailed: bool = False,
         include_total_count: bool = False,
-        sharing: bool = False,
     ) -> Tuple[List[Any], int]:
         """Return a list of Visualizations viewable by the user