Update readcounts.rst

griffithlab · Sep 23, 2024 · 509b933 · 509b933
1 parent 839a061
commit 509b933
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/docs/pvacseq/input_file_prep/readcounts.rst b/docs/pvacseq/input_file_prep/readcounts.rst
@@ -134,7 +134,7 @@ from a VCF and run bam-readcount. Information on that Docker container can be fo
 .. code-block:: none
 
    /usr/bin/python /usr/bin/bam_readcount_helper.py \
-   <decomposed_vcf> <sample_name> <reference_fasta> <bam_file> <output_dir>
+   <decomposed_vcf> <sample_name> <reference_fasta> <bam_file> NOPREFIX <output_dir>
 
 This will write two bam-readcount files to the ``<output_dir>``:
 ``<sample_name>_bam_readcount_snv.tsv`` and