Skip to content

Commit

Permalink
Update gadma to 2.0.2 (bioconda#51967)
Browse files Browse the repository at this point in the history
* Update gadma to 2.0.1

* clean up recipe

* Update gadma to 2.0.2

* `trapz` has been removed in scipy 1.14.0

---------

Co-authored-by: mencian <[email protected]>
Co-authored-by: Joshua Zhuang <[email protected]>
  • Loading branch information
3 people authored and glis-glis committed Nov 8, 2024
1 parent 69a4dbe commit 9987b3a
Showing 1 changed file with 13 additions and 8 deletions.
21 changes: 13 additions & 8 deletions recipes/gadma/meta.yaml
Original file line number Diff line number Diff line change
@@ -1,13 +1,13 @@
{% set name = "gadma" %}
{% set version = "2.0.0" %}
{% set version = "2.0.2" %}

package:
name: "{{ name|lower }}"
version: "{{ version }}"

source:
url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
sha256: 1e891b87749261ce9c1866fd3e0ac389306096e3b940eb364101448efeca4cfd
sha256: f7b610d0d347e97afb30e6b5f9a814c19e479203838de31aa2e44f7427073db5

build:
number: 0
Expand All @@ -19,27 +19,31 @@ build:
- gadma-get_confidence_intervals = gadma.get_confidence_intervals:main
- gadma-get_confidence_intervals_for_ld = gadma.get_confidence_intervals_for_ld:main
- gadma-precompute_ld_data = gadma.precompute_ld_data:main
script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
noarch: python
run_exports:
- {{ pin_subpackage('gadma', max_pin="x") }}

requirements:
host:
- python >=3.6,<3.9
- python >=3.6
- pip
- setuptools-scm
- setuptools
run:
- python >=3.6,<3.9
- python >=3.6
- dadi
- demes
- demesdraw
- h5py ==3.10.0
- matplotlib-base
- mpmath
- nlopt
- numpy
- pandas
- pandas <=2.2.2
- pillow
- ruamel.yaml
- scipy
- ruamel.yaml ==0.16.12
- scipy <1.14
- networkx
- moments
- scikit-allel
Expand Down Expand Up @@ -69,6 +73,7 @@ about:
license_file: LICENSE
summary: "Genetic Algorithm for Demographic Inference"
doc_url: https://gadma.readthedocs.io/en/latest/
dev_url: "https://github.com/ctlab/GADMA"

extra:
identifiers:
Expand Down

0 comments on commit 9987b3a

Please sign in to comment.