Merge pull request #4 from getwilds/dockerhub

Switching images from GHCR to DockerHub
getwilds · Jul 8, 2024 · 7b2fa56 · 7b2fa56
2 parents 2c7b760 + dc08a8e
commit 7b2fa56
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diff --git a/helloDockerHostname/helloDockerHostname.wdl b/helloDockerHostname/helloDockerHostname.wdl
@@ -4,7 +4,7 @@ version 1.0
 
 #### WORKFLOW DEFINITION
 
-workflow HelloSingularityHostname {
+workflow HelloDockerHostname {
   call Hostname {
   }
 
@@ -32,6 +32,7 @@ task Hostname {
     cpu: 1
     memory: "1 GB"
     docker: "ubuntu:latest"
+    # modules: "Python/3.7.4-foss-2019b-fh1"
   }
 
   parameter_meta {

diff --git a/variantCalling/variantCalling.wdl b/variantCalling/variantCalling.wdl
@@ -53,9 +53,9 @@ workflow PanelBwaGatk4Annovar {
     ReferenceData reference_genome
   }
 
-  String gatk_docker = "ghcr.io/getwilds/gatk:4.3.0.0"
-  String annovar_docker = "ghcr.io/getwilds/annovar:${reference_genome.ref_name}"
-  String bwa_docker = "ghcr.io/getwilds/bwa:0.7.17"
+  String gatk_docker = "getwilds/gatk:4.3.0.0"
+  String annovar_docker = "getwilds/annovar:${reference_genome.ref_name}"
+  String bwa_docker = "getwilds/bwa:0.7.17"
 
   scatter (sample in sample_batch){
     File bam = sample.bam_file