Updating Formatting According to WILDS Guidelines #12
Workflow file for this run
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| name: WOMtool Validation of WDL Script | |
| on: | |
| pull_request: | |
| types: [opened, reopened, synchronize] | |
| permissions: | |
| contents: read | |
| packages: write | |
| jobs: | |
| womtoolval: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - | |
| name: Checkout | |
| uses: actions/checkout@v4 | |
| - | |
| name: Set Up Java | |
| uses: actions/setup-java@v4 | |
| with: | |
| distribution: 'temurin' | |
| java-version: '21' | |
| - | |
| name: Pull WOMtool Jarfile | |
| run: wget -q https://github.com/broadinstitute/cromwell/releases/download/86/womtool-86.jar | |
| - | |
| name: Validate WDL Scripts | |
| run: | | |
| java -jar womtool-86.jar validate helloHostname/helloHostname.wdl | |
| java -jar womtool-86.jar validate helloDockerHostname/helloDockerHostname.wdl | |
| java -jar womtool-86.jar validate parseBatchFile/parseBatchFile.wdl -i parseBatchFile/parseBatchFile-inputs.json | |
| java -jar womtool-86.jar validate variantCalling/variantCalling.wdl -i variantCalling/variantCalling-inputs.json | |