Updating Formatting According to WILDS Guidelines #2
Workflow file for this run
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| name: Cromwell Test Run | |
| on: | |
| pull_request: | |
| types: [opened, reopened, synchronize] | |
| jobs: | |
| testrun: | |
| runs-on: ubuntu-latest | |
| permissions: write-all | |
| steps: | |
| - | |
| name: Checkout | |
| uses: actions/checkout@v4 | |
| - | |
| name: Set Up Java | |
| uses: actions/setup-java@v4 | |
| with: | |
| distribution: 'temurin' | |
| java-version: '21' | |
| - | |
| name: Pull Cromwell Jarfile | |
| run: wget -q https://github.com/broadinstitute/cromwell/releases/download/86/cromwell-86.jar | |
| - | |
| name: Execute Test Run of WDL Workflows | |
| run: | | |
| java -jar cromwell-86.jar run helloHostname/helloHostname.wdl | |
| java -jar cromwell-86.jar run helloSingularityHostname/helloSingularityHostname.wdl | |
| java -jar cromwell-86.jar run parseBatchFile/parseBatchFile.wdl --inputs parseBatchFile/parseBatchFile-inputs.json | |