Minor improvements to jobs and call fxns #70
Workflow file for this run
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| on: [push, pull_request] | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-java@v4 | |
| with: | |
| distribution: 'zulu' | |
| java-version: '21' | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - name: spin up cromwell | |
| run: | | |
| wget https://github.com/broadinstitute/cromwell/releases/download/86/cromwell-86.jar | |
| java -jar cromwell-86.jar server & | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck | |
| needs: check | |
| - uses: r-lib/actions/check-r-package@v2 | |
| env: | |
| CROMWELLURL: http://localhost:8000 | |
| - name: cleanup cromwell | |
| run: kill $(ps -eaf | grep 'cromwell-[0-9][0-9].jar' | awk '{ print $2 }') |