PROOF v1.1

What's New

proof-api

• Moving scratch directory default to /hpc/temp/ for onboarded users (@dtenenba in #75)
• Fixing linting errors (@dtenenba in #73)
• Avoiding concurrent pulls of Docker images (@dtenenba in #56)
• Removing api_endpoint and logged_in_user from info endpoint (@dtenenba and @tefirman in #63, #72)
• Customizing Slurm submission comment to include environment (@dtenenba in #71)
• Updating link to WDL101 (@tefirman in #61)
• Restricting PROOF to rhino01 (@dtenenba in #70)
• Adding check for proper AWS configuration (@dtenenba in #74)
• Identifying "zombie" tasks and making Cromwell notice them (@dtenenba and @atombaby in #77, #81, #82, #83, #84)

shiny-cromwell

• Adding workflow labels to the "Workflows Run" table (@sckott in #117)
• Introducing make run_branch command for local Docker build (@dtenenba in #124)
• Switching help dropdown from email to issue filing (@sckott in #128)
• Adding new tab for visualizing input json's (@sckott in #120)
• Adding new tab for creating WDL script mermaid diagrams (@dtenenba in #125)
• Utilizing cookies to persist user login (@sckott in #130)

rcromwell

• Swapping httr for httr2 and fixing styling (@sckott in #48)

proofr

• Swapping httr for httr2 (@sckott in #25)
• Improving documentation (@sckott in #27, #28, #29, #30)
• Fixing linting errors identified by GitHub Action (@tefirman and @sckott in #32)

proofad

• Started the project and initialized repo!!! 🥳
• Developed sacct-based queries and implemented dashboard prototype (@howardbaik and @sckott in #1, #5)
• Developed Cromwell-based queries (@tefirman in #13, #14, #17)

Full Changelog: v1.0...v1.1

PROOF v1.0

What's New

proof-api

• Enabling interactions with data stored in S3 (@dtenenba in #19)
• Switching from Waitress to Gunicorn for better scalability and efficiency (@dtenenba in #21)
• Updating Apptainer cache location to avoid linkage issues (@dtenenba in #22, #38)
• Adding info endpoint to provide version details (@dtenenba in #34, #39, #40, #44)
• Updating automated email message to include links to PROOF docs (@tefirman in #27, #44)
• Enabling GPU capabilities via the gpu runtime argument (@dtenenba in #36, #44)
• Adding linting to CI/CD and fixing code formatting issues (@dtenenba in #50, #51, #53)

shiny-cromwell

• Adding links to PROOF documentation on the welcome tab (@tefirman in #95, #101)
• Adding PROOF server start datetime (@seankross in #93, #101)
• Enabling replicas and stickiness to account for increasing volumes (@dtenenba in #103, #104, #101)
• Abbreviating long entries in display tables (@sckott in #101)
• Beautifying browser title to "PROOF" rather than url (@dtenenba in #101)

rcromwell

• No updates since PROOF v0.1 (3/1/24)

proofr

• No updates since PROOF v0.1 (3/1/24)

Full Changelog: https://github.com/getwilds/proof/commits/v1.0