Add pkgdown fix #79 (#80)

* Add pkgdown fix #79

* Declutter

.Rbuildignore

@@ -42,3 +42,6 @@
 ^rawdata/
 ^CRAN-SUBMISSION$
 ^\.editorconfig$
+^_pkgdown\.yml$
+^docs$
+^pkgdown$

.github/workflows/pkgdown.yaml

@@ -0,0 +1,51 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+
+on:
+  push:
+    branches:
+      - v*
+  pull_request:
+    branches:
+      - v*
+  release:
+    types: [published]
+  workflow_dispatch:
+
+name: pkgdown
+
+jobs:
+  pkgdown:
+    runs-on: ubuntu-latest
+    # Only restrict concurrency for non-PR jobs
+    concurrency:
+      group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    permissions:
+      contents: write
+    steps:
+      - uses: actions/checkout@v3
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::pkgdown, local::.
+          needs: website
+
+      - name: Build site
+        run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
+        shell: Rscript {0}
+
+      - name: Deploy to GitHub pages 🚀
+        if: github.event_name != 'pull_request'
+        uses: JamesIves/[email protected]
+        with:
+          clean: false
+          branch: gh-pages
+          folder: docs

.gitignore

@@ -1,3 +1,4 @@
 doc
 Meta
 ^cran-comments\.md$
+docs

DESCRIPTION

@@ -2,11 +2,12 @@ Package: oolong
 Title: Create Validation Tests for Automated Content Analysis
 Version: 0.5.1
 Authors@R: 
-    c(person(given = "Chung-hong", family = "Chan", role = c("aut", "cre"), email = "[email protected]", comment = c(ORCID = "0000-0002-6232-7530")), person(given = "Marius", family = "Sältzer", role = c("aut"), email = "[email protected]", comment = c(ORCID = "0000-0002-8604-4666")))
+    c(person(given = "Chung-hong", family = "Chan", role = c("aut", "cre"), email = "[email protected]", comment = c(ORCID = "0000-0002-6232-7530")),
+    person(given = "Marius", family = "Sältzer", role = c("aut"), email = "[email protected]", comment = c(ORCID = "0000-0002-8604-4666")))
 Description: Intended to create standard human-in-the-loop validity tests for typical automated content analysis such as topic modeling and dictionary-based methods. This package offers a standard workflow with functions to prepare, administer and evaluate a human-in-the-loop validity test. This package provides functions for validating topic models using word intrusion, topic intrusion (Chang et al. 2009,  <https://papers.nips.cc/paper/3700-reading-tea-leaves-how-humans-interpret-topic-models>) and word set intrusion (Ying et al. 2021) <doi:10.1017/pan.2021.33> tests. This package also provides functions for generating gold-standard data which are useful for validating dictionary-based methods. The default settings of all generated tests match those suggested in Chang et al. (2009) and Song et al. (2020) <doi:10.1080/10584609.2020.1723752>.
 License: LGPL (>= 2.1)
 Encoding: UTF-8
-URL: https://github.com/gesistsa/oolong
+URL: https://gesistsa.github.io/oolong, https://github.com/gesistsa/oolong
 LazyData: true
 Depends:
     R (>= 4.0)
@@ -43,3 +44,4 @@ Suggests:
 BugReports: https://github.com/gesistsa/oolong/issues
 VignetteBuilder: knitr
 Config/testthat/edition: 3
+Config/Needs/website: gesistsa/tsatemplate

Makefile

@@ -1,37 +1,8 @@
-all: vignettes overviewgh build ghdocs 
+all: build
 
 .FORCE:
 
-vignettes: .FORCE
-	cat vig_head.Rmd | sed 's/{title}/Overview/g' > vig_temp.Rmd
-	cat vig_temp.Rmd vig_body.Rmd > vignettes/overview.Rmd
-	rm vig_temp.Rmd
-	cat vig_head.Rmd | sed 's/{title}/BTM/g' > vig_temp.Rmd
-	cat vig_temp.Rmd btm.Rmd > vignettes/btm.Rmd
-	rm vig_temp.Rmd
-	cat vig_head.Rmd | sed 's/{title}/Deploy/g' > vig_temp.Rmd
-	cat vig_temp.Rmd deploy.Rmd > vignettes/deploy.Rmd
-	rm vig_temp.Rmd
-
-overviewgh: vignettes
-	cat gh_head.Rmd | sed 's/{title}/Overview/g' > gh_temp.Rmd
-	cat gh_temp.Rmd vig_body.Rmd > overview_gh.Rmd
-	rm gh_temp.Rmd
-	cat gh_head.Rmd | sed 's/{title}/BTM/g' > gh_temp.Rmd
-	cat gh_temp.Rmd btm.Rmd > btm_gh.Rmd
-	rm gh_temp.Rmd
-	cat gh_head.Rmd | sed 's/{title}/Deploy/g' > gh_temp.Rmd
-	cat gh_temp.Rmd deploy.Rmd > gh_temp2.Rmd
-	cat gh_temp2.Rmd | sed 's;figures;vignettes/figures;g' > deploy_gh.Rmd
-	rm gh_temp.Rmd gh_temp2.Rmd
-
-build: vignettes
+build:
 	Rscript -e "devtools::document()"
 	Rscript -e "devtools::install(quick = TRUE, upgrade = 'never')"
 	Rscript -e "devtools::check()"
-
-ghdocs: overviewgh
-	Rscript -e "rmarkdown::render('README.Rmd')"
-	Rscript -e "rmarkdown::render('overview_gh.Rmd')"
-	Rscript -e "rmarkdown::render('btm_gh.Rmd')"
-	Rscript -e "rmarkdown::render('deploy_gh.Rmd')"

README.Rmd

@@ -14,7 +14,7 @@ knitr::opts_chunk$set(
 set.seed(42)
 ```
 
-# oolong <img src="man/figures/oolong_logo.svg" align="right" height="200" />
+# oolong <img src="man/figures/oolong_logo.png" align="right" width="120" />
 
 <!-- badges: start -->
 [![Codecov test coverage](https://codecov.io/gh/gesistsa/oolong/branch/v0.5/graph/badge.svg)](https://codecov.io/gh/gesistsa/oolong?branch=v0.5)
@@ -26,7 +26,7 @@ set.seed(42)
 
 The goal of oolong ^[/ˈuːlʊŋ/ 烏龍, literally means "Dark Dragon", is a semi-oxidized tea from Asia. It is very popular in Taiwan, Japan and Hong Kong. In Cantonese and Taiwanese Mandarin, the same word can also mean "confused". It perfectly captures the spirit of human-in-the-loop validation. ] is to generate and administrate validation tests easily for typical automated content analysis tools such as topic models and dictionary-based tools.
 
-Please refer to the [overview](overview_gh.md) for an introduction to this package. If you need to deploy the test online, please refer to the [Deployment Vignette](deploy_gh.md). If you use BTM, please refer to the [BTM Vignette](btm_gh.md).
+Please refer to the [overview](https://gesistsa.github.io/oolong/articles/overview.html) for an introduction to this package. If you need to deploy the test online, please refer to the [Deployment Vignette](https://gesistsa.github.io/oolong/articles/deploy.html). If you use BTM, please refer to the [BTM Vignette](https://gesistsa.github.io/oolong/articles/btm.html).
 
 ## Citation
 

README.md

@@ -1,7 +1,7 @@
 
 <!-- README.md is generated from README.Rmd. Please edit that file -->
 
-# oolong <img src="man/figures/oolong_logo.svg" align="right" height="200" />
+# oolong <img src="man/figures/oolong_logo.png" align="right" width="120" />
 
 <!-- badges: start -->
 
@@ -19,10 +19,13 @@ The goal of oolong \[1\] is to generate and administrate validation
 tests easily for typical automated content analysis tools such as topic
 models and dictionary-based tools.
 
-Please refer to the [overview](overview_gh.md) for an introduction to
-this package. If you need to deploy the test online, please refer to the
-[Deployment Vignette](deploy_gh.md). If you use BTM, please refer to the
-[BTM Vignette](btm_gh.md).
+Please refer to the
+[overview](https://gesistsa.github.io/oolong/articles/overview.html) for
+an introduction to this package. If you need to deploy the test online,
+please refer to the [Deployment
+Vignette](https://gesistsa.github.io/oolong/articles/deploy.html). If
+you use BTM, please refer to the [BTM
+Vignette](https://gesistsa.github.io/oolong/articles/btm.html).
 
 ## Citation
 

_pkgdown.yml

@@ -0,0 +1,3 @@
+url: https://gesistsa.github.io/oolong/
+template:
+  package: tsatemplate