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Gerber Lab

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  1. mitre mitre Public

    The Microbiome Interpretable Temporal Rule Engine

    Python 46 4

  2. MDSINE2 MDSINE2 Public

    Python 21 8

  3. mditre mditre Public

    Python 11 7

  4. mctimme2 mctimme2 Public

    Python 5 2

  5. cdiff_paper_analyses cdiff_paper_analyses Public

    Jupyter Notebook 1

  6. cs109b-microbiome cs109b-microbiome Public

    Jupyter Notebook 1 1

Repositories

Showing 10 of 12 repositories
  • MDSINE2 Public
    gerberlab/MDSINE2’s past year of commit activity
    Python 21 GPL-3.0 8 3 0 Updated Jan 21, 2025
  • MDSINE2_Paper Public
    gerberlab/MDSINE2_Paper’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Jan 14, 2025
  • mmethane Public
    gerberlab/mmethane’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 12, 2024
  • MCSPACE Public

    MCSPACE: A generative AI-based model for identifying, from sequencing data, spatially co-localized assemblages of microbes, and detecting changes in the proportions of these assemblages over time and due to introduced perturbations

    gerberlab/MCSPACE’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Dec 6, 2024
  • mmethane-paper-results Public
    gerberlab/mmethane-paper-results’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 4, 2024
  • RuleBasedDynamics Public

    Rule based dynamical systems model for microbe time-series data

    gerberlab/RuleBasedDynamics’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Aug 8, 2023
  • cs109b-microbiome Public
    gerberlab/cs109b-microbiome’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Apr 26, 2022
  • cdiff_paper_analyses Public
    gerberlab/cdiff_paper_analyses’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Apr 20, 2022
  • mditre Public
    gerberlab/mditre’s past year of commit activity
    Python 11 GPL-3.0 7 0 0 Updated Feb 5, 2022
  • mitre Public

    The Microbiome Interpretable Temporal Rule Engine

    gerberlab/mitre’s past year of commit activity
    Python 46 GPL-3.0 4 4 0 Updated May 26, 2021
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