Merge pull request #47 from georgian-io/hotfix/ver-bump

Dependency Version Bump

.gitignore

@@ -76,3 +76,6 @@ logs
 /docs/source/generated_api/
 /docs/source/README.md
 /docs/build/
+
+# Distro
+/dist

Dockerfile

@@ -1,6 +1,6 @@
 # syntax=docker/dockerfile:1
 # FROM ufoym/deepo:all-jupyter-py38
-FROM nvidia/cuda:11.2.1-cudnn8-devel-ubuntu20.04
+FROM nvidia/cuda:12.1.0-cudnn8-devel-ubuntu20.04
 
 RUN DEBIAN_FRONTEND=noninteractive apt-get update && \
     apt-get install -y --no-install-recommends git python3.8 python3 python3-pip

oats/_utils/dlutils.py

@@ -261,7 +261,7 @@ def __init__(self, d_model, nhead, dim_feedforward=16, dropout=0):
 
         self.activation = nn.LeakyReLU(True)
 
-    def forward(self, src, src_mask=None, src_key_padding_mask=None):
+    def forward(self, src, src_mask=None, src_key_padding_mask=None, **kwargs):
         src2 = self.self_attn(src, src, src)[0]
         src = src + self.dropout1(src2)
         src2 = self.linear2(self.dropout(self.activation(self.linear1(src))))
@@ -291,6 +291,7 @@ def forward(
         memory_mask=None,
         tgt_key_padding_mask=None,
         memory_key_padding_mask=None,
+        **kwargs
     ):
         tgt2 = self.self_attn(tgt, tgt, tgt)[0]
         tgt = tgt + self.dropout1(tgt2)

oats/preprocessor/spectral_residual.py

@@ -56,7 +56,7 @@ def _extrapolate_next(values):
     """
 
     last_value = values[-1]
-    slope = [(last_value - v) / i for (i, v) in enumerate(values[::-1])]
+    slope = [(last_value - v) / (i+1e-5) for (i, v) in enumerate(values[::-1])]
     slope[0] = 0
     next_values = last_value + np.cumsum(slope)
 

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "pyoats"
-version = "0.1.2"
+version = "0.1.3"
 description = "Quick and Easy Time Series Outlier Detection"
 authors = ["Benjamin Ye <[email protected]>"]
 license = "Apache-2.0"
@@ -10,26 +10,27 @@ packages = [
 ]
 
 [tool.poetry.dependencies]
-python = ">=3.8, <3.11"
-numpy = ">=1.22.4"
-darts = "0.23.0"
-statsmodels = "^0.13.2"
-scipy = "1.7.3"
-pyod = "1.0.4"
-stumpy = "^1.11.1"
-jenkspy = "^0.2.2"
-optuna = "^2.10.0"
-statsforecast = "1.0.0"
-tensorflow = {version = ">=2.9.3", markers = "sys_platform != 'darwin'"}
-tensorflow-macos = {version = ">=2.9.2 <2.10", markers = "sys_platform == 'darwin'"}
-tensorflow-metal = {version = "0.5.0 < 0.6.0", markers = "sys_platform == 'darwin'"}
-tqdm = "^4.64.1"
+python = ">=3.9, <3.12"
+darts = "0.28.0"
+statsmodels = "^0.14.1"
+pyod = "1.1.3"
+stumpy = "^1.12.0"
+jenkspy = "^0.2.4"
+optuna = "^2.10.1"
+statsforecast = "^1.7.3"
+tensorflow = {version = ">=2.15.0", markers = "sys_platform != 'darwin'"}
+tensorflow-macos = {version = ">=2.15.0", markers = "sys_platform == 'darwin'"}
+tensorflow-metal = {version = "0.5.0", markers = "sys_platform == 'darwin'"}
+tqdm = "^4.66.2"
+lightgbm = "^4.3.0"
+numpy = "^1.26.4"
+scipy = "^1.12.0"
 
 [tool.poetry.group.dev.dependencies]
-pytest = "^7.1.3"
-black = "^22.8.0"
-pylint = "^2.15.3"
-Sphinx = "^5.2.3"
+pytest = "^7.4.4"
+black = "^22.12.0"
+pylint = "^2.17.7"
+Sphinx = "^5.3.0"
 pydata-sphinx-theme = "^0.10.1"
 myst-parser = "^0.18.1"
 

requirements.txt

@@ -1,24 +1,143 @@
-optuna==2.10.0
-darts==0.23
-tensorboard==2.9.1
-numpy==1.22.4
-pandas==1.4.3
-statsmodels==0.13.2
-scipy==1.9.0
-pyod==1.0.4
-stumpy==1.11.1
-pytest==7.1.2
-jenkspy==0.2.2
-statsforecast==1.0.0
-tensorflow==2.9.3; sys_platform != 'darwin'
-tensorflow-macos==2.9.2; sys_platform == 'darwin'
-tensorflow-metal==0.5.0; sys_platform == 'darwin'
-torch==1.13.1
-pytorch-lightning==1.6.5
-
-sphinx
-black
-pylint
-Sphinx
-pydata-sphinx-theme
-myst-parser
+absl-py==2.1.0 ; python_version >= "3.8" and python_version < "3.11"
+adagio==0.2.4 ; python_version >= "3.8" and python_version < "3.11"
+aiohttp==3.9.3 ; python_version >= "3.8" and python_version < "3.11"
+aiosignal==1.3.1 ; python_version >= "3.8" and python_version < "3.11"
+alembic==1.13.1 ; python_version >= "3.8" and python_version < "3.11"
+antlr4-python3-runtime==4.11.1 ; python_version >= "3.8" and python_version < "3.11"
+appdirs==1.4.4 ; python_version >= "3.8" and python_version < "3.11"
+astunparse==1.6.3 ; python_version >= "3.8" and python_version < "3.11"
+async-timeout==4.0.3 ; python_version >= "3.8" and python_version < "3.11"
+attrs==23.2.0 ; python_version >= "3.8" and python_version < "3.11"
+autopage==0.5.2 ; python_version >= "3.8" and python_version < "3.11"
+cachetools==5.3.3 ; python_version >= "3.8" and python_version < "3.11"
+certifi==2024.2.2 ; python_version >= "3.8" and python_version < "3.11"
+charset-normalizer==3.3.2 ; python_version >= "3.8" and python_version < "3.11"
+cliff==4.6.0 ; python_version >= "3.8" and python_version < "3.11"
+cloudpickle==3.0.0 ; python_version >= "3.8" and python_version < "3.11"
+cmaes==0.10.0 ; python_version >= "3.8" and python_version < "3.11"
+cmd2==2.4.3 ; python_version >= "3.8" and python_version < "3.11"
+colorama==0.4.6 ; python_version >= "3.8" and python_version < "3.11" and (platform_system == "Windows" or sys_platform == "win32")
+colorlog==6.8.2 ; python_version >= "3.8" and python_version < "3.11"
+contourpy==1.1.1 ; python_version >= "3.8" and python_version < "3.11"
+cycler==0.12.1 ; python_version >= "3.8" and python_version < "3.11"
+cython==3.0.9 ; python_version >= "3.8" and python_version < "3.11"
+darts==0.28.0 ; python_version >= "3.8" and python_version < "3.11"
+filelock==3.13.1 ; python_version >= "3.8" and python_version < "3.11"
+flatbuffers==24.3.7 ; python_version >= "3.8" and python_version < "3.11"
+fonttools==4.49.0 ; python_version >= "3.8" and python_version < "3.11"
+frozenlist==1.4.1 ; python_version >= "3.8" and python_version < "3.11"
+fs==2.4.16 ; python_version >= "3.8" and python_version < "3.11"
+fsspec==2024.2.0 ; python_version >= "3.8" and python_version < "3.11"
+fsspec[http]==2024.2.0 ; python_version >= "3.8" and python_version < "3.11"
+fugue-sql-antlr==0.2.0 ; python_version >= "3.8" and python_version < "3.11"
+fugue==0.8.7 ; python_version >= "3.8" and python_version < "3.11"
+gast==0.4.0 ; python_version >= "3.8" and python_version < "3.11"
+google-auth-oauthlib==1.0.0 ; python_version >= "3.8" and python_version < "3.11"
+google-auth==2.28.1 ; python_version >= "3.8" and python_version < "3.11"
+google-pasta==0.2.0 ; python_version >= "3.8" and python_version < "3.11"
+greenlet==3.0.3 ; python_version >= "3.8" and python_version < "3.11" and (platform_machine == "win32" or platform_machine == "WIN32" or platform_machine == "AMD64" or platform_machine == "amd64" or platform_machine == "x86_64" or platform_machine == "ppc64le" or platform_machine == "aarch64")
+grpcio==1.62.1 ; python_version >= "3.8" and python_version < "3.11"
+h5py==3.10.0 ; python_version >= "3.8" and python_version < "3.11"
+holidays==0.44 ; python_version >= "3.8" and python_version < "3.11"
+idna==3.6 ; python_version >= "3.8" and python_version < "3.11"
+importlib-metadata==7.0.2 ; python_version >= "3.8" and python_version < "3.10"
+importlib-resources==6.1.3 ; python_version >= "3.8" and python_version < "3.10"
+jax==0.4.13 ; python_version >= "3.8" and python_version < "3.11"
+jenkspy==0.2.4 ; python_version >= "3.8" and python_version < "3.11"
+jinja2==3.1.3 ; python_version >= "3.8" and python_version < "3.11"
+joblib==1.3.2 ; python_version >= "3.8" and python_version < "3.11"
+keras==2.12.0 ; python_version >= "3.8" and python_version < "3.11"
+kiwisolver==1.4.5 ; python_version >= "3.8" and python_version < "3.11"
+libclang==16.0.6 ; python_version >= "3.8" and python_version < "3.11"
+lightgbm==4.3.0 ; python_version >= "3.8" and python_version < "3.11"
+lightning-utilities==0.10.1 ; python_version >= "3.8" and python_version < "3.11"
+llvmlite==0.41.1 ; python_version >= "3.8" and python_version < "3.11"
+mako==1.3.2 ; python_version >= "3.8" and python_version < "3.11"
+markdown==3.5.2 ; python_version >= "3.8" and python_version < "3.11"
+markupsafe==2.1.5 ; python_version >= "3.8" and python_version < "3.11"
+matplotlib==3.7.5 ; python_version >= "3.8" and python_version < "3.11"
+ml-dtypes==0.2.0 ; python_version >= "3.8" and python_version < "3.11"
+mpmath==1.3.0 ; python_version >= "3.8" and python_version < "3.11"
+multidict==6.0.5 ; python_version >= "3.8" and python_version < "3.11"
+networkx==3.1 ; python_version >= "3.8" and python_version < "3.11"
+nfoursid==1.0.1 ; python_version >= "3.8" and python_version < "3.11"
+numba==0.58.1 ; python_version >= "3.8" and python_version < "3.11"
+numpy==1.22.4 ; python_version >= "3.8" and python_version < "3.11"
+nvidia-cublas-cu12==12.1.3.1 ; platform_system == "Linux" and platform_machine == "x86_64" and python_version >= "3.8" and python_version < "3.11"
+nvidia-cuda-cupti-cu12==12.1.105 ; platform_system == "Linux" and platform_machine == "x86_64" and python_version >= "3.8" and python_version < "3.11"
+nvidia-cuda-nvrtc-cu12==12.1.105 ; platform_system == "Linux" and platform_machine == "x86_64" and python_version >= "3.8" and python_version < "3.11"
+nvidia-cuda-runtime-cu12==12.1.105 ; platform_system == "Linux" and platform_machine == "x86_64" and python_version >= "3.8" and python_version < "3.11"
+nvidia-cudnn-cu12==8.9.2.26 ; platform_system == "Linux" and platform_machine == "x86_64" and python_version >= "3.8" and python_version < "3.11"
+nvidia-cufft-cu12==11.0.2.54 ; platform_system == "Linux" and platform_machine == "x86_64" and python_version >= "3.8" and python_version < "3.11"
+nvidia-curand-cu12==10.3.2.106 ; platform_system == "Linux" and platform_machine == "x86_64" and python_version >= "3.8" and python_version < "3.11"
+nvidia-cusolver-cu12==11.4.5.107 ; platform_system == "Linux" and platform_machine == "x86_64" and python_version >= "3.8" and python_version < "3.11"
+nvidia-cusparse-cu12==12.1.0.106 ; platform_system == "Linux" and platform_machine == "x86_64" and python_version >= "3.8" and python_version < "3.11"
+nvidia-nccl-cu12==2.19.3 ; platform_system == "Linux" and platform_machine == "x86_64" and python_version >= "3.8" and python_version < "3.11"
+nvidia-nvjitlink-cu12==12.4.99 ; platform_system == "Linux" and platform_machine == "x86_64" and python_version >= "3.8" and python_version < "3.11"
+nvidia-nvtx-cu12==12.1.105 ; platform_system == "Linux" and platform_machine == "x86_64" and python_version >= "3.8" and python_version < "3.11"
+oauthlib==3.2.2 ; python_version >= "3.8" and python_version < "3.11"
+opt-einsum==3.3.0 ; python_version >= "3.8" and python_version < "3.11"
+optuna==2.10.1 ; python_version >= "3.8" and python_version < "3.11"
+packaging==23.2 ; python_version >= "3.8" and python_version < "3.11"
+pandas==1.5.3 ; python_version >= "3.8" and python_version < "3.11"
+patsy==0.5.6 ; python_version >= "3.8" and python_version < "3.11"
+pbr==6.0.0 ; python_version >= "3.8" and python_version < "3.11"
+pillow==10.2.0 ; python_version >= "3.8" and python_version < "3.11"
+pmdarima==2.0.4 ; python_version >= "3.8" and python_version < "3.11"
+prettytable==3.10.0 ; python_version >= "3.8" and python_version < "3.11"
+protobuf==4.25.3 ; python_version >= "3.8" and python_version < "3.11"
+pyarrow==15.0.1 ; python_version >= "3.8" and python_version < "3.11"
+pyasn1-modules==0.3.0 ; python_version >= "3.8" and python_version < "3.11"
+pyasn1==0.5.1 ; python_version >= "3.8" and python_version < "3.11"
+pyod==1.1.3 ; python_version >= "3.8" and python_version < "3.11"
+pyparsing==3.1.2 ; python_version >= "3.8" and python_version < "3.11"
+pyperclip==1.8.2 ; python_version >= "3.8" and python_version < "3.11"
+pyreadline3==3.4.1 ; python_version >= "3.8" and python_version < "3.11" and sys_platform == "win32"
+python-dateutil==2.9.0.post0 ; python_version >= "3.8" and python_version < "3.11"
+pytorch-lightning==2.2.1 ; python_version >= "3.8" and python_version < "3.11"
+pytz==2024.1 ; python_version >= "3.8" and python_version < "3.11"
+pyyaml==6.0.1 ; python_version >= "3.8" and python_version < "3.11"
+qpd==0.4.4 ; python_version >= "3.8" and python_version < "3.11"
+requests-oauthlib==1.3.1 ; python_version >= "3.8" and python_version < "3.11"
+requests==2.31.0 ; python_version >= "3.8" and python_version < "3.11"
+rsa==4.9 ; python_version >= "3.8" and python_version < "3.11"
+scikit-learn==1.3.2 ; python_version >= "3.8" and python_version < "3.11"
+scipy==1.7.3 ; python_version >= "3.8" and python_version < "3.11"
+setuptools==69.1.1 ; python_version >= "3.8" and python_version < "3.11"
+shap==0.44.1 ; python_version >= "3.8" and python_version < "3.11"
+six==1.15.0 ; python_version >= "3.8" and python_version < "3.11"
+slicer==0.0.7 ; python_version >= "3.8" and python_version < "3.11"
+sqlalchemy==2.0.28 ; python_version >= "3.8" and python_version < "3.11"
+sqlglot==22.2.1 ; python_version >= "3.8" and python_version < "3.11"
+statsforecast==1.7.3 ; python_version >= "3.8" and python_version < "3.11"
+statsmodels==0.14.1 ; python_version >= "3.8" and python_version < "3.11"
+stevedore==5.2.0 ; python_version >= "3.8" and python_version < "3.11"
+stumpy==1.12.0 ; python_version >= "3.8" and python_version < "3.11"
+sympy==1.12 ; python_version >= "3.8" and python_version < "3.11"
+tbats==1.1.3 ; python_version >= "3.8" and python_version < "3.11"
+tensorboard-data-server==0.7.2 ; python_version >= "3.8" and python_version < "3.11"
+tensorboard==2.12.3 ; python_version >= "3.8" and python_version < "3.11"
+tensorboardx==2.6.2.2 ; python_version >= "3.8" and python_version < "3.11"
+tensorflow-estimator==2.12.0 ; python_version >= "3.8" and python_version < "3.11"
+tensorflow-io-gcs-filesystem==0.36.0 ; python_version >= "3.8" and python_version < "3.11" and (platform_machine != "arm64" or platform_system != "Darwin")
+tensorflow-macos==2.12.0 ; python_version >= "3.8" and python_version < "3.11" and sys_platform == "darwin"
+tensorflow-metal==0.5.0 ; python_version >= "3.8" and python_version < "3.11" and sys_platform == "darwin"
+tensorflow==2.12.0 ; python_version >= "3.8" and python_version < "3.11" and sys_platform != "darwin"
+termcolor==2.4.0 ; python_version >= "3.8" and python_version < "3.11"
+threadpoolctl==3.3.0 ; python_version >= "3.8" and python_version < "3.11"
+torch==2.2.1 ; python_version >= "3.8" and python_version < "3.11"
+torchmetrics==1.3.1 ; python_version >= "3.8" and python_version < "3.11"
+tqdm==4.66.2 ; python_version >= "3.8" and python_version < "3.11"
+triad==0.9.5 ; python_version >= "3.8" and python_version < "3.11"
+triton==2.2.0 ; platform_system == "Linux" and platform_machine == "x86_64" and python_version < "3.11" and python_version >= "3.8"
+typing-extensions==4.10.0 ; python_version >= "3.8" and python_version < "3.11"
+urllib3==2.2.1 ; python_version >= "3.8" and python_version < "3.11"
+utilsforecast==0.1.1 ; python_version >= "3.8" and python_version < "3.11"
+wcwidth==0.2.13 ; python_version >= "3.8" and python_version < "3.11"
+werkzeug==3.0.1 ; python_version >= "3.8" and python_version < "3.11"
+wheel==0.42.0 ; python_version >= "3.8" and python_version < "3.11"
+wrapt==1.14.1 ; python_version >= "3.8" and python_version < "3.11"
+xarray==2023.1.0 ; python_version >= "3.8" and python_version < "3.11"
+xgboost==2.0.3 ; python_version >= "3.8" and python_version < "3.11"
+yarl==1.9.4 ; python_version >= "3.8" and python_version < "3.11"
+zipp==3.17.0 ; python_version >= "3.8" and python_version < "3.10"

setup.py

@@ -3,7 +3,7 @@
 
 setup(
     name="pyoats",
-    version="0.1.2",
+    version="0.1.3",
     description="Quick and Easy Time Series Anomaly Detection",
     author="Benjamin Ye, Georgian Partners LP",
     author_email="[email protected]",