Parent/def/name/xref edits. #29533

[sjm41]

No description provided.

[github-actions]

Here's a diff of how these changes impact the classified ontology:

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2025-01-14/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2025-01-14/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owl

Ontology imports

Ontology annotations

(d)CMP kinase activity http://purl.obolibrary.org/obo/GO_0004127

Removed

• (d)CMP kinase activity SubClassOf nucleoside monophosphate kinase activity

Added

• (d)CMP kinase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29533"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• (d)CMP kinase activity SubClassOf nucleobase-containing compound kinase activity

(deoxy)adenylate kinase activity http://purl.obolibrary.org/obo/GO_0047506

Removed

• (deoxy)adenylate kinase activity database_cross_reference "EC:2.7.4.11"

• (deoxy)adenylate kinase activity database_cross_reference "RHEA:23100"

• (deoxy)adenylate kinase activity label "(deoxy)adenylate kinase activity"

• (deoxy)adenylate kinase activity database_cross_reference "MetaCyc:DEOXYADENYLATE-KINASE-RXN"

• (deoxy)adenylate kinase activity definition "Catalysis of the reaction: ATP + dAMP = ADP + dADP."

  • database_cross_reference "EC:2.7.4.11"

• (deoxy)adenylate kinase activity SubClassOf kinase activity

• (deoxy)adenylate kinase activity SubClassOf phosphotransferase activity, phosphate group as acceptor

• (deoxy)adenylate kinase activity SubClassOf has participant some ATP(4-)

• (deoxy)adenylate kinase activity SubClassOf has participant some ADP(3-)

Added

• (deoxy)adenylate kinase activity database_cross_reference "EC:2.7.4.11"

  • source "skos:exactMatch"

• (deoxy)adenylate kinase activity database_cross_reference "RHEA:23100"

  • source "skos:exactMatch"

• (deoxy)adenylate kinase activity definition "Catalysis of the reaction: dAMP + ATP = dADP + ADP."

  • database_cross_reference "RHEA:23100"

• (deoxy)adenylate kinase activity label "deoxyadenylate kinase activity"

• (deoxy)adenylate kinase activity database_cross_reference "MetaCyc:DEOXYADENYLATE-KINASE-RXN"

  • source "skos:exactMatch"

• (deoxy)adenylate kinase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29533"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• (deoxy)adenylate kinase activity SubClassOf (deoxy)nucleoside-phosphate kinase activity

(deoxy)nucleoside phosphate kinase activity, GTP as phosphate donor http://purl.obolibrary.org/obo/GO_0106369

Removed

• (deoxy)nucleoside phosphate kinase activity, GTP as phosphate donor label "(deoxy)nucleoside phosphate kinase activity, GTP as phosphate donor"

Added

• (deoxy)nucleoside phosphate kinase activity, GTP as phosphate donor label "deoxynucleoside phosphate kinase activity, GTP as phosphate donor"

(deoxy)nucleoside phosphate kinase activity, dGTP as phosphate donor http://purl.obolibrary.org/obo/GO_0106367

Removed

• (deoxy)nucleoside phosphate kinase activity, dGTP as phosphate donor label "(deoxy)nucleoside phosphate kinase activity, dGTP as phosphate donor"

Added

• (deoxy)nucleoside phosphate kinase activity, dGTP as phosphate donor label "deoxynucleoside phosphate kinase activity, dGTP as phosphate donor"

(deoxy)nucleoside phosphate kinase activity, dTTP as phosphate donor http://purl.obolibrary.org/obo/GO_0106368

Removed

• (deoxy)nucleoside phosphate kinase activity, dTTP as phosphate donor label "(deoxy)nucleoside phosphate kinase activity, dTTP as phosphate donor"

Added

• (deoxy)nucleoside phosphate kinase activity, dTTP as phosphate donor label "deoxynucleoside phosphate kinase activity, dTTP as phosphate donor"

(deoxy)nucleoside-phosphate kinase activity http://purl.obolibrary.org/obo/GO_0047507

Removed

• (deoxy)nucleoside-phosphate kinase activity definition "Catalysis of the reaction: ATP + deoxynucleoside phosphate = ADP + deoxynucleoside diphosphate."

  • database_cross_reference "EC:2.7.4.13"

• (deoxy)nucleoside-phosphate kinase activity label "(deoxy)nucleoside-phosphate kinase activity"

Added

• (deoxy)nucleoside-phosphate kinase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29533"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• (deoxy)nucleoside-phosphate kinase activity definition "Catalysis of the reaction: a 2'-deoxyribonucleoside 5'-phosphate + ATP = a 2'-deoxyribonucleoside 5'-diphosphate + ADP."

  • database_cross_reference "RHEA:11216"

• (deoxy)nucleoside-phosphate kinase activity has_broad_synonym "deoxynucleoside-phosphate kinase activity"

• (deoxy)nucleoside-phosphate kinase activity label "deoxynucleoside-phosphate kinase activity, ATP as phosphate donor"

CMP kinase activity http://purl.obolibrary.org/obo/GO_0036430

Removed

• CMP kinase activity database_cross_reference "RHEA:11600"

Added

• CMP kinase activity database_cross_reference "EC:2.7.4.25"

  • source "skos:broadMatch"

• CMP kinase activity database_cross_reference "RHEA:11600"

  • source "skos:exactMatch"

• CMP kinase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29533"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• CMP kinase activity database_cross_reference "EC:2.7.4.14"

  • source "skos:broadMatch"

• CMP kinase activity SubClassOf nucleoside monophosphate kinase activity

T2-induced deoxynucleotide kinase activity http://purl.obolibrary.org/obo/GO_0050316

Removed

• T2-induced deoxynucleotide kinase activity label "T2-induced deoxynucleotide kinase activity"

• T2-induced deoxynucleotide kinase activity database_cross_reference "MetaCyc:GMKALT-RXN"

• T2-induced deoxynucleotide kinase activity database_cross_reference "RHEA:12697"

• T2-induced deoxynucleotide kinase activity definition "Catalysis of the reactions: ATP + dGMP = ADP + dGDP, and ATP + dTMP = ADP + dTDP."

  • database_cross_reference "EC:2.7.4.12"

• T2-induced deoxynucleotide kinase activity database_cross_reference "EC:2.7.4.12"

• T2-induced deoxynucleotide kinase activity SubClassOf has participant some ADP(3-)

• T2-induced deoxynucleotide kinase activity SubClassOf kinase activity

• T2-induced deoxynucleotide kinase activity SubClassOf phosphotransferase activity, phosphate group as acceptor

• T2-induced deoxynucleotide kinase activity SubClassOf has participant some ATP(4-)

Added

• T2-induced deoxynucleotide kinase activity database_cross_reference "EC:2.7.4.12"

  • source "skos:broadMatch"

• T2-induced deoxynucleotide kinase activity database_cross_reference "RHEA:12697"

  • source "skos:exactMatch"

• T2-induced deoxynucleotide kinase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29533"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• T2-induced deoxynucleotide kinase activity definition "Catalysis of the reaction: dGMP + ATP = dGDP + ADP."

  • database_cross_reference "RHEA:12697"

• T2-induced deoxynucleotide kinase activity label "dGMP kinase activity"

• T2-induced deoxynucleotide kinase activity has_broad_synonym "T2-induced deoxynucleotide kinase activity"

  • database_cross_reference "EC:2.7.4.12"

• T2-induced deoxynucleotide kinase activity database_cross_reference "MetaCyc:GMKALT-RXN"

  • source "skos:exactMatch"

• T2-induced deoxynucleotide kinase activity SubClassOf (deoxy)nucleoside-phosphate kinase activity

UMP kinase activity http://purl.obolibrary.org/obo/GO_0033862

Added

• UMP kinase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29533"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• UMP kinase activity SubClassOf nucleoside monophosphate kinase activity

UMP/dUMP kinase activity http://purl.obolibrary.org/obo/GO_0009041

Removed

• UMP/dUMP kinase activity SubClassOf nucleoside monophosphate kinase activity

Added

• UMP/dUMP kinase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29533"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• UMP/dUMP kinase activity SubClassOf nucleobase-containing compound kinase activity

adenylate kinase activity http://purl.obolibrary.org/obo/GO_0004017

Removed

• adenylate kinase activity definition "Catalysis of the reaction: ATP + AMP = 2 ADP."

  • database_cross_reference "EC:2.7.4.3"

• adenylate kinase activity database_cross_reference "MetaCyc:ADENYL-KIN-RXN"

• adenylate kinase activity database_cross_reference "EC:2.7.4.3"

• adenylate kinase activity database_cross_reference "RHEA:12973"

Added

• adenylate kinase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29533"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• adenylate kinase activity definition "Catalysis of the reaction: ATP + AMP = 2 ADP."

  • database_cross_reference "RHEA:12973"

• adenylate kinase activity database_cross_reference "RHEA:12973"

  • source "skos:exactMatch"

• adenylate kinase activity database_cross_reference "MetaCyc:ADENYL-KIN-RXN"

  • source "skos:exactMatch"

• adenylate kinase activity database_cross_reference "EC:2.7.4.3"

  • source "skos:exactMatch"

dCMP kinase activity http://purl.obolibrary.org/obo/GO_0036431

Removed

• dCMP kinase activity database_cross_reference "RHEA:25094"

Added

• dCMP kinase activity database_cross_reference "EC:2.7.4.25"

  • source "skos:broadMatch"

• dCMP kinase activity database_cross_reference "RHEA:25094"

  • source "skos:exactMatch"

• dCMP kinase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29533"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• dCMP kinase activity database_cross_reference "EC:2.7.4.14"

  • source "skos:broadMatch"

• dCMP kinase activity SubClassOf (deoxy)nucleoside-phosphate kinase activity

dUMP kinase activity http://purl.obolibrary.org/obo/GO_0120136

Added

• dUMP kinase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29533"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• dUMP kinase activity SubClassOf (deoxy)nucleoside-phosphate kinase activity

guanylate kinase activity http://purl.obolibrary.org/obo/GO_0004385

Removed

• guanylate kinase activity database_cross_reference "RHEA:20780"

• guanylate kinase activity database_cross_reference "EC:2.7.4.8"

• guanylate kinase activity database_cross_reference "MetaCyc:GUANYL-KIN-RXN"

• guanylate kinase activity definition "Catalysis of the reaction: ATP + GMP = ADP + GDP."

  • database_cross_reference "EC:2.7.4.8"

Added

• guanylate kinase activity database_cross_reference "RHEA:20780"

  • source "skos:exactMatch"

• guanylate kinase activity database_cross_reference "MetaCyc:GUANYL-KIN-RXN"

  • source "skos:exactMatch"

• guanylate kinase activity database_cross_reference "EC:2.7.4.8"

  • source "skos:exactMatch"

• guanylate kinase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29533"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• guanylate kinase activity definition "Catalysis of the reaction: ATP + GMP = ADP + GDP."

  • database_cross_reference "RHEA:20780"

nucleoside monophosphate kinase activity http://purl.obolibrary.org/obo/GO_0050145

Removed

• nucleoside monophosphate kinase activity definition "Catalysis of the reaction: ATP + nucleoside monophosphate = ADP + nucleoside diphosphate."

  • database_cross_reference "GOC:ai"

  • database_cross_reference "ISBN:0198506732"

Added

• nucleoside monophosphate kinase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29533"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• nucleoside monophosphate kinase activity definition "Catalysis of the reaction: a ribonucleoside 5'-phosphate + ATP = a ribonucleoside 5'-diphosphate + ADP."

  • database_cross_reference "RHEA:24036"

thymidylate kinase activity http://purl.obolibrary.org/obo/GO_0004798

Removed

• thymidylate kinase activity label "thymidylate kinase activity"

• thymidylate kinase activity definition "Catalysis of the reaction: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate."

  • database_cross_reference "EC:2.7.4.9"

• thymidylate kinase activity database_cross_reference "MetaCyc:DTMPKI-RXN"

• thymidylate kinase activity database_cross_reference "RHEA:13517"

• thymidylate kinase activity has_exact_synonym "dTMP kinase activity"

• thymidylate kinase activity database_cross_reference "EC:2.7.4.9"

• thymidylate kinase activity SubClassOf nucleoside monophosphate kinase activity

Added

• thymidylate kinase activity database_cross_reference "RHEA:13517"

  • source "skos:exactMatch"

• thymidylate kinase activity database_cross_reference "EC:2.7.4.12"

  • source "skos:broadMatch"

• thymidylate kinase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29533"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• thymidylate kinase activity label "dTMP kinase activity"

• thymidylate kinase activity definition "Catalysis of the reaction: dTMP + ATP = dTDP + ADP."

  • database_cross_reference "RHEA:13517"

• thymidylate kinase activity database_cross_reference "EC:2.7.4.9"

  • source "skos:exactMatch"

• thymidylate kinase activity has_exact_synonym "thymidylate kinase activity"

• thymidylate kinase activity database_cross_reference "MetaCyc:DTMPKI-RXN"

  • source "skos:exactMatch"

• thymidylate kinase activity SubClassOf (deoxy)nucleoside-phosphate kinase activity