Merge pull request #29614 from geneontology/issue-29544

created new term fixes #29544

src/ontology/go-edit.obo

@@ -34418,15 +34418,15 @@ synonym: "NAD-linked aldehyde dehydrogenase activity" RELATED [EC:1.2.1.3]
 synonym: "propionaldehyde dehydrogenase activity" RELATED [EC:1.2.1.3]
 xref: EC:1.2.1.3
 xref: MetaCyc:ALDHDEHYDROG-RXN
-xref: RHEA:16185
-xref: RHEA:25294 {source="skos:narrowMatch"}
+xref: RHEA:16185 {source="skos:exactMatch"}
 xref: UM-BBD_reactionID:r0003
 xref: UM-BBD_reactionID:r0023
 xref: UM-BBD_reactionID:r0605
 xref: Wikipedia:Aldehyde_dehydrogenase_(NAD+)
 is_a: GO:0004030 ! aldehyde dehydrogenase [NAD(P)+] activity
 property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27180" xsd:anyURI
 property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28144" xsd:anyURI
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29544" xsd:anyURI
 
 [Term]
 id: GO:0004030
@@ -34435,10 +34435,11 @@ namespace: molecular_function
 def: "Catalysis of the reaction: an aldehyde + NAD(P)+ + H2O = an acid + NAD(P)H + H+." [EC:1.2.1.5]
 synonym: "aldehyde:NAD(P)+ oxidoreductase activity" RELATED [EC:1.2.1.5]
 synonym: "ALDH" RELATED [EC:1.2.1.5]
-xref: EC:1.2.1.5
+xref: EC:1.2.1.5 {source="skos:exactMatch"}
 xref: MetaCyc:ALDEHYDE-DEHYDROGENASE-NADORNOP+-RXN
 is_a: GO:0016620 ! oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
 property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28183" xsd:anyURI
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29544" xsd:anyURI
 
 [Term]
 id: GO:0004031
@@ -133325,7 +133326,6 @@ xref: MetaCyc:BENZALDEHYDE-DEHYDROGENASE-NADP+-RXN
 xref: RHEA:21660
 xref: UM-BBD_enzymeID:r0214
 xref: UM-BBD_enzymeID:r0222
-is_a: GO:0019115 ! benzaldehyde dehydrogenase [NAD(P)+] activity
 is_a: GO:0033721 ! aldehyde dehydrogenase (NADP+) activity
 
 [Term]
@@ -133354,7 +133354,6 @@ xref: MetaCyc:BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN
 xref: RHEA:11840
 xref: UM-BBD_reactionID:r0269
 is_a: GO:0004029 ! aldehyde dehydrogenase (NAD+) activity
-is_a: GO:0019115 ! benzaldehyde dehydrogenase [NAD(P)+] activity
 
 [Term]
 id: GO:0018480
@@ -140173,11 +140172,15 @@ consider: GO:0018577
 
 [Term]
 id: GO:0019115
-name: benzaldehyde dehydrogenase [NAD(P)+] activity
+name: obsolete benzaldehyde dehydrogenase [NAD(P)+] activity
 namespace: molecular_function
-def: "Catalysis of the reaction: benzaldehyde + NAD(P)+ + H2O = benzoate + NAD(P)H + H+." [GOC:curators]
-is_a: GO:0004030 ! aldehyde dehydrogenase [NAD(P)+] activity
+def: "OBSOLETE. Catalysis of the reaction: benzaldehyde + NAD(P)+ + H2O = benzoate + NAD(P)H + H+." [GOC:curators]
+comment: This term was obsoleted because it is an unnecessary grouping class.
 property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27180" xsd:anyURI
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29615" xsd:anyURI
+is_obsolete: true
+consider: GO:0018477
+consider: GO:0018479
 
 [Term]
 id: GO:0019116
@@ -196205,10 +196208,11 @@ def: "Catalysis of the reaction: an aldehyde + NADP+ + H2O = an acid + NADPH + H
 synonym: "aldehyde:NADP+ oxidoreductase activity" RELATED [EC:1.2.1.4]
 synonym: "NADP-acetaldehyde dehydrogenase activity" RELATED [EC:1.2.1.4]
 synonym: "NADP-dependent aldehyde dehydrogenase activity" RELATED [EC:1.2.1.4]
-xref: EC:1.2.1.4
+xref: EC:1.2.1.4 {source="skos:exactMatch"}
 xref: MetaCyc:ALDEHYDE-DEHYDROGENASE-NADP+-RXN
-xref: RHEA:11888
+xref: RHEA:11888 {source="skos:exactMatch"}
 is_a: GO:0004030 ! aldehyde dehydrogenase [NAD(P)+] activity
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29544" xsd:anyURI
 
 [Term]
 id: GO:0033722
@@ -311098,7 +311102,7 @@ property_value: term_tracker_item "https://github.com/geneontology/go-ontology/i
 
 [Term]
 id: GO:0050269
-name: coniferyl-aldehyde dehydrogenase activity
+name: coniferyl-aldehyde dehydrogenase [NAD(P)+] activity
 namespace: molecular_function
 def: "Catalysis of the reaction: coniferyl aldehyde + H2O + NAD(P)+ = ferulate + NAD(P)H + H+." [EC:1.2.1.68]
 synonym: "coniferyl aldehyde:NAD(P)+ oxidoreductase activity" RELATED [EC:1.2.1.68]
@@ -451422,6 +451426,28 @@ property_value: term_tracker_item "https://github.com/geneontology/go-ontology/i
 created_by: pg
 creation_date: 2025-01-27T14:40:44Z
 
+[Term]
+id: GO:0140087
+name: acetaldehyde dehydrogenase (NAD+) activity
+namespace: molecular_function
+def: "Catalysis of the reaction: acetaldehyde + NAD+ + H2O = acetate + NADH + 2 H+." [PMID:9473035, RHEA:25294]
+xref: RHEA:25294
+is_a: GO:0004029 ! aldehyde dehydrogenase (NAD+) activity
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29544" xsd:anyURI
+created_by: pg
+creation_date: 2025-01-28T07:26:40Z
+
+[Term]
+id: GO:0140088
+name: acetaldehyde dehydrogenase (NADP+) activity
+namespace: molecular_function
+def: "Catalysis of the reaction: acetaldehyde + NADP+ + H2O = acetate + NADPH + 2 H+." [PMID:15659684, PMID:9473035, RHEA:25298]
+xref: RHEA:25298
+is_a: GO:0033721 ! aldehyde dehydrogenase (NADP+) activity
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29544" xsd:anyURI
+created_by: pg
+creation_date: 2025-01-28T07:28:10Z
+
 [Term]
 id: GO:0140090
 name: membrane curvature sensor activity