Merge pull request #28946 from geneontology/issue-28868

Issue 28868

src/ontology/go-edit.obo

@@ -62763,10 +62763,13 @@ property_value: term_tracker_item "https://github.com/geneontology/go-ontology/i
 
 [Term]
 id: GO:0006507
-name: GPI anchor release
+name: obsolete GPI anchor release
 namespace: biological_process
-def: "The GPI anchor metabolic process that results in enzymatic cleavage of the anchor, releasing an anchored protein from the membrane." [GOC:mah, PMID:18811934]
-is_a: GO:0006505 ! GPI anchor metabolic process
+def: "OBSOLETE. The GPI anchor metabolic process that results in enzymatic cleavage of the anchor, releasing an anchored protein from the membrane." [GOC:mah, PMID:18811934]
+comment: The reason for obsoletion is that this term represents a molecular function.
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28868" xsd:anyURI
+is_obsolete: true
+consider: GO:0004621
 
 [Term]
 id: GO:0006508
@@ -141152,7 +141155,7 @@ name: deacetylase activity
 namespace: molecular_function
 def: "Catalysis of the hydrolysis of an acetyl group or groups from a substrate molecule." [GOC:jl]
 subset: goslim_pir
-is_a: GO:0016787 ! hydrolase activity
+is_a: GO:0160215 ! deacylase activity
 
 [Term]
 id: GO:0019214
@@ -441698,12 +441701,13 @@ creation_date: 2019-10-17T19:10:50Z
 
 [Term]
 id: GO:0106231
-name: protein-propionyllysine depropionylase activity
+name: NAD-dependent protein-lysine depropionylase activity
 namespace: molecular_function
 def: "Catalysis of the reaction:H2O + N(6)-propanoyl-L-lysyl-[protein] + NAD+ = 3''-O-propanoyl-ADP-D-ribose + L-lysyl-[protein] + nicotinamide." [GOC:sp, PMID:30026585, RHEA:23500]
 comment: This reaction is the removal of a propionyl group from a propionylated lysine residue of a protein or peptide.
 xref: RHEA:23500
-is_a: GO:0033558 ! protein lysine deacetylase activity
+is_a: GO:0160215 ! deacylase activity
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28920" xsd:anyURI
 created_by: hjd
 creation_date: 2019-10-18T14:14:47Z
 
@@ -462616,12 +462620,13 @@ creation_date: 2024-06-07T08:13:32Z
 
 [Term]
 id: GO:0141208
-name: protein lysine delactylase activity
+name: NAD-dependent protein lysine delactylase activity
 namespace: molecular_function
 def: "Catalysis of the reaction: H2O + N6-lactoyl-L-lysyl-[protein] + NAD = L-lysyl-[protein] + nicotinamide +2''-O-lactoyl-ADP-D-ribose, removing a lactoyl group attached to a lysine residue in a protein." [PMID:38512451, RHEA:80287]
 xref: RHEA:80287
-is_a: GO:0033558 ! protein lysine deacetylase activity
+is_a: GO:0160215 ! deacylase activity
 property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28015" xsd:anyURI
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28920" xsd:anyURI
 created_by: pg
 creation_date: 2024-06-07T08:37:00Z
 
@@ -466511,6 +466516,27 @@ property_value: term_tracker_item "https://github.com/geneontology/go-ontology/i
 created_by: rynl
 creation_date: 2024-09-12T20:22:40Z
 
+[Term]
+id: GO:0160215
+name: deacylase activity
+namespace: molecular_function
+def: "Catalysis of the reaction: R-CO-X + H2O = R-COOH + HX, hydrolysis of an acyl group or groups from a substrate molecule." [PMID:2760018, PMID:29637793, PMID:38355760]
+is_a: GO:0016787 ! hydrolase activity
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28920" xsd:anyURI
+created_by: rynl
+creation_date: 2024-09-16T23:45:30Z
+
+[Term]
+id: GO:0160216
+name: protein lysine delactylase activity
+namespace: molecular_function
+def: "Catalysis of the reaction: H2O + N6-lactoyl-L-lysyl-[protein] = (S)-lactate + L-lysyl-[protein]." [PMID:35044827]
+xref: RHEA:81387
+is_a: GO:0160215 ! deacylase activity
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28920" xsd:anyURI
+created_by: rynl
+creation_date: 2024-09-17T00:03:19Z
+
 [Term]
 id: GO:0170001
 name: ergothioneine transmembrane transporter activity