3.0.0

• Updated workflows to WDL1.0
• Removed GenerateOutputMap task from bam to unmappedbam workflow because "if other lines in the header contain the characters @rg, they will be caught here. "
• Removed fc version of fastq2ubam because updates to Terra make working Data tables easier. Creating a seperate file with sample metadata isn't necessary.
• Added default variables to cram2bam
• Simplified pair2ubam workflow to accept one pair of samples at a time, making it easier for Terra users

2.0.0

Added interleaved-fastq-to-paired-fastq.wdl
Decreased the memory size for Cram2Bam wdl

1.0.1

• Added default docker for Cram2Bam

1.0.0

• Added cram-to-bam.

• Added bam-to-unmapped-bams wdl

• Update README.md

• Changed to use latest gatk docker

• paired-fastq-to-unmapped-bam now uses arrays as input

• Added a firecloud version for paired-fastq-to-unmapped-bam

Convert paired FASTQ to uBAM

Initial release; the JSON array format of the input is rather awkward and should probably be changed to using a table file of some sort. Nevertheless it is functional.