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Fully move to Pydantic v2 #793

Merged
merged 58 commits into from
Jul 24, 2024
Merged

Fully move to Pydantic v2 #793

merged 58 commits into from
Jul 24, 2024

Commits on Jul 15, 2024

  1. force pydantic > 2

    Your Name committed Jul 15, 2024
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  2. migrate channels model

    Your Name committed Jul 15, 2024
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Commits on Jul 16, 2024

  1. naive transition to v2

    Your Name committed Jul 16, 2024
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  2. fix: test_NgffImageMetadata failing because of non-unique multiscales… 

    … and not at run time
    Your Name committed Jul 16, 2024
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  3. fix missing None in NapariInputModel Optionals

    Your Name committed Jul 16, 2024
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  4. fix more Optionals without explicit None

    Your Name committed Jul 16, 2024
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  5. fix: fix mismatched Validation error

    Your Name committed Jul 16, 2024
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  6. fix: fix more basic validation errors

    Your Name committed Jul 16, 2024
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  7. fix: cellpose validation

    Your Name committed Jul 16, 2024
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  8. update changelog

    Your Name committed Jul 16, 2024
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  9. Merge branch 'main' of github.com:fractal-analytics-platform/fractal-… 

    …tasks-core into main
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  10. merge main

    Your Name committed Jul 16, 2024
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  11. fix: Avoid direct Self imports for 3.9 compatibility

    Your Name committed Jul 16, 2024
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  12. fix: revert erroneous move

    Your Name committed Jul 16, 2024
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  13. udpate .dict methods to .model_dump

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  14. update .copy to .model_copy

    Your Name committed Jul 16, 2024
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Commits on Jul 17, 2024

  1. Provisionally restore .dict() in cellpose task to simplify merge fr… 

    …om `main`
    @tcompa
    tcompa committed Jul 17, 2024
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  2. Merge branch 'main' into pydantic-v2-second-attempt

    @tcompa
    tcompa committed Jul 17, 2024
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  3. REVERT: Provisionally restore .dict() in cellpose task to simplify … 

    …merge from `main`
    @tcompa
    tcompa committed Jul 17, 2024
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  4. In-progress: Update of JSON schema tools to pydantic v1/v2

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    tcompa committed Jul 17, 2024
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  5. Include pydantic-v2-second-attempt target for CI

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    tcompa committed Jul 17, 2024
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  6. Do not include fractal-tasks-core Pydantic models, when using pydanti… 

    …c v1
    @tcompa
    tcompa committed Jul 17, 2024
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  7. Add FIXME

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    tcompa committed Jul 17, 2024
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  8. Change logging level

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    tcompa committed Jul 17, 2024
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Commits on Jul 19, 2024

  1. Stop supporting Pydantic-V1 JSON-Schema generation (ref #802)

    @tcompa
    tcompa committed Jul 19, 2024
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  2. Update manifest

    @tcompa
    tcompa committed Jul 19, 2024
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  3. Update some pydantic_v1 labels left in dev tools

    @tcompa
    tcompa committed Jul 19, 2024
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  4. Update tests

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    tcompa committed Jul 19, 2024
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  5. Also handle custom models with no docstring

    @tcompa
    tcompa committed Jul 19, 2024
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  6. poetry remove pytest-pretty

    @tcompa
    tcompa committed Jul 19, 2024
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  7. Fix test_valid_args_schemas

    @tcompa
    tcompa committed Jul 19, 2024
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  8. Restore .github/workflows/ci_poetry.yml [skip ci]

    @tcompa
    tcompa committed Jul 19, 2024
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  9. Remove comment [skip ci]

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    tcompa committed Jul 19, 2024
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  10. Add assertions to test_otional_argument

    @tcompa
    tcompa committed Jul 19, 2024
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  11. Update CHANGELOG [skip ci]

    @tcompa
    tcompa committed Jul 19, 2024
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  12. Merge pull request #801 from fractal-analytics-platform/pydantic-v2-s… 

    …econd-attempt-jsonschema

Pydantic v2 second attempt jsonschema
    @tcompa
    tcompa authored Jul 19, 2024
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  13. Add None default in task model

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    tcompa committed Jul 19, 2024
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  14. Improve GHA comments [skip ci]

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    tcompa committed Jul 19, 2024
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  15. Update CHANGELOG [skip ci]

    @tcompa
    tcompa committed Jul 19, 2024
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  16. Always install fractal-tasks extra when building manifest of extern… 

    …al packages
    @tcompa
    tcompa committed Jul 19, 2024
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  17. Fix GHA comment

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    tcompa committed Jul 19, 2024
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Commits on Jul 22, 2024

  1. Use new branch for APX

    @tcompa
    tcompa committed Jul 22, 2024
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  2. Specify branch for external packages

    @tcompa
    tcompa committed Jul 22, 2024
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  3. Do not use devtools in manifest building phase

    @tcompa
    tcompa committed Jul 22, 2024
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  4. Add cleanup to GHA

    @tcompa
    tcompa committed Jul 22, 2024
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  5. Do not install pytorch within GHA

    @tcompa
    tcompa committed Jul 22, 2024
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  6. Fix GHA

    @tcompa
    tcompa committed Jul 22, 2024
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  7. Clarify docstring [skip ci]

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    tcompa committed Jul 22, 2024
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  8. Test validator when coordinateTransformations=None

    @tcompa
    tcompa committed Jul 22, 2024
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  9. Test new unique_items_validator

    @tcompa
    tcompa committed Jul 22, 2024
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  10. Extract pydantic-v2 JSON-Schema tools into separate module

    @tcompa
    tcompa committed Jul 22, 2024
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  11. Merge branch 'main' into pydantic-v2-second-attempt

    @tcompa
    tcompa committed Jul 22, 2024
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  12. Update CHANGELOG [skip ci]

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    tcompa committed Jul 22, 2024
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Commits on Jul 23, 2024

  1. Fix generate_zarr_ones.py and plate_ones.zarr

    @tcompa
    tcompa committed Jul 23, 2024
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  2. Remove comment [skip ci]

    @tcompa
    tcompa committed Jul 23, 2024
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  3. Update test_enum_arguments.py to pydantic v2

    @tcompa
    tcompa committed Jul 23, 2024
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  4. Update test_create_schema_for_single_task.py to pydantic v2

    @tcompa
    tcompa committed Jul 23, 2024
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  5. Add test_tuple_argument

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    tcompa committed Jul 23, 2024
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