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MeSH Annual Updates

filak edited this page Jan 24, 2025 · 35 revisions
  1. Download the official MeSH RDF dataset https://github.com/filak/MTW-MeSH/wiki/Loading-MeSH-datasets#get-the-official-mesh-rdf-dataset

  2. ALWAYS perform the checks and resolve any issues in MTW - ie. duplicates, locks, pending changes etc.

  3. Export required output files from MTW - ie. UMLS TSV, MARC file, stats etc.

  4. BACKUP your <mesh> dataset using Fuseki interface

  5. Extract the translation from the backup using mesh-nt2trx tool - run:

     mesh-nt2trx %FUSEKI_BASE%/backups/mesh_YYYY-MM-DD_....nq.gz
    
  6. Stop MTW Server and MTW Worker services

  7. Go to your <FUSEKI_DATA_DIR> and DELETE the <mesh> directories under datatabases and indexes dirs

  8. Update MTW config file for new target year/period

    <MTW_HOME_DIR>/instance/conf/mtw.ini

  9. Follow the steps in Import the RDF datasets

  10. Clear the MTW cache - delete all files in instance/cache

  11. Start MTW Server and MTW Worker services

  12. Reset the Initial stats in Manage dashboard

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