Merge for new release #557
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Fix segmentation fault with distance decluster int32 limit
Bump obspy version for NCEDC tests
* Update test_conda_env.yml * Bump min version tested * Update setup.py * pin obspy * Update test_conda_env.yml * Update runtest.yml * Try removing pinning * Remove all pinning * Update actions * Update runtest.yml * Update test_conda_env.yml * Update runtest.yml * Update test_conda_env_macOS.yml * Update runtest.yml * Pin clang version. clang 14 was generating issue with omp * Reduce deps to see if something works. * Add in clangdev * Update h5py pinning * Add more libs * Update test_conda_env_macOS.yml * Update test_conda_env_macOS.yml * Ignore compilers - use system? * Try with mkl * llvm openmp and do not mix channels * libclang * libcxx * Meh? * libcxx * Try to match conda build env
…ream (#530) * hypodd-prep: take proper care of fence post problem when slicing; throw away first sample when trace too long * adjust hypodd-prep-test for trace length extract_len * samp_rate * add changelog entry Co-authored-by: Calum Chamberlain <[email protected]>
* speedup select detections for each template with dict lookup and quick prepick adding * changelog entry * remove commented lines Co-authored-by: Calum Chamberlain <[email protected]>
* apply the quickest trace-selection by ID where it matters most * add changelog entry and remove commented lines Co-authored-by: Calum Chamberlain <[email protected]>
Speedup 07: 5x speedup with parallel parallel median / MAD calculation
* fix merge conflict * use list of tuples for making unique template groups * add changelog entry * Stickler * Stickler * Use eqcorscan func rather than robustraqn. * Add tests for grouping and remove copy test * add _processing_parameters as function / attribute for Template * simplify same_processing function, do not include pre_pick in _processing_parameters Co-authored-by: Calum Chamberlain <[email protected]>
…er` (#527) * speed up unique detection list making * add changelog, remove commented lines * pycodestyle * revert change for uniq() with set() that should not work because detection should be unhashable * fix reversion to set Co-authored-by: Calum Chamberlain <[email protected]>
…y and trace-selection (#525) * speed up prep_data_for_correlation with custom copy and trace-selection * add changelog, remove unused imports * quicker to define empty starttimes with ns=0; need to copy nan-numpy array * slightly more optimization for quick trace copy * add deepcopy option and documentation to quick copy functions * use quick stream copy function for continuous data and templates * remove stream_quick_select from this PR * 5 % more speedup with quicker .ns - retrieval * properly set stats-dict for nan-channels Co-authored-by: Calum Chamberlain <[email protected]>
* let user choose allowed vertical can horizontal chans in template_gen * add all_vert option * add options to pick on all vertical/horizontal channels * add changelog entries * consistently add channel 3 to default horizontal channels * add test with OBS data for all vertical channels-options * hanning window now only accesible as hann in scipy * limit scipy version until obspy is updated * make sure all horizontal chan defaults exclude channel '3' * adjust edge case with horizontal channels named '3' Co-authored-by: Calum Chamberlain <[email protected]>
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What does this PR do?
Merge updates from develop into master ready for a new release.