Rename infect_period and prob_infect to infectious_period and prob_infection
#219
Workflow file for this run
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| # | |
| # Reproduce locally by running: | |
| # ```r | |
| # pak::pak(c("any::pkgdown", "."), dependencies = "Config/Needs/website") | |
| # pkgdown::build_site() | |
| # ``` | |
| on: | |
| push: | |
| branches: [main, master] | |
| paths: | |
| - 'README.Rmd' | |
| - 'README.md' | |
| - 'index.Rmd' | |
| - 'index.md' | |
| - 'man/**' | |
| - 'vignettes/**' | |
| - '_pkgdown.yml' | |
| - 'pkgdown/**' | |
| - 'DESCRIPTION' | |
| - '.Rbuildignore' | |
| - '.github/**' | |
| merge_group: | |
| pull_request: | |
| paths: | |
| - 'README.Rmd' | |
| - 'README.md' | |
| - 'index.Rmd' | |
| - 'index.md' | |
| - 'man/**' | |
| - 'vignettes/**' | |
| - '_pkgdown.yml' | |
| - 'pkgdown/**' | |
| - 'DESCRIPTION' | |
| - '.Rbuildignore' | |
| - '.github/**' | |
| release: | |
| types: [published] | |
| workflow_dispatch: | |
| name: pkgdown | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| permissions: | |
| contents: write | |
| jobs: | |
| pkgdown: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::pkgdown, local::. | |
| needs: website | |
| - name: Build site | |
| run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE) | |
| shell: Rscript {0} | |
| - name: Check website links | |
| uses: untitaker/[email protected] | |
| with: | |
| args: docs/ | |
| - name: Deploy to GitHub pages 🚀 | |
| if: github.event_name != 'merge_group' && github.event_name != 'pull_request' | |
| uses: JamesIves/[email protected] | |
| with: | |
| # We clean on releases because we want to remove old vignettes, | |
| # figures, etc. that have been deleted from the `main` branch. | |
| # But we clean ONLY on releases because we want to be able to keep | |
| # both the 'stable' and 'dev' websites. | |
| # Also discussed in https://github.com/r-lib/actions/issues/484 | |
| clean: ${{ github.event_name == 'release' }} | |
| branch: gh-pages | |
| folder: docs |