v1.1.0

Added

• full_length_only parameter to process only full length reads (default: true).
• Trim adapters, barcodes and UMIs from reads before alignment.
• Memory directive for umap process to prevent parallel processes from using too much memory.

Changed

• Orient 3prime/multiome reads to mRNA sense to avoid need to flip later.
• Default umap_n_repeats lowered to 3.
• Genome reference alignment done by chunk.

Fixed

• Issue where splice junctions were searched for on incorrect strand.