v2.2.5
Fixed
- Non-deterministic SNP output when
--phased
is on. - Post-Clair3
whatshap
phases only SNVs to match whatshap<2.0 behaviour. - Updated ont-spectre to v0.2.2 to fix an apparent callCNV hang.
- Updated
straglr
to v1.4.5 to fix possible ZeroDivisionError during call_str.
Changed
- Updated
modkit
to v0.3.0. - SV subworkflow publishes SNF file for onward multi-sample SV calling.