Merge branch 'fix-colors' into 'dev'

fix color See merge request epi2melabs/workflow-containers/wf-alignment!57
epi2me-labs · Jun 29, 2022 · 29f01e0 · 29f01e0
2 parents 388906b + cec7de8
commit 29f01e0
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Showing 4 changed files with 7 additions and 3 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -4,6 +4,10 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [v0.1.7]
+### Fixed
+- Coloring with less than 3 samples
+
 ## [v0.1.6]
 ### Fixed
 - run id and barcode output correctly

diff --git a/bin/report.py b/bin/report.py
@@ -438,7 +438,7 @@ def plot_base_pairs(self, data):
         data = pd.Series(base_pairs).reset_index(
             name='value').rename(columns={'index': 'group'})
         data['angle'] = data['value']/data['value'].sum() * 2 * math.pi
-        if len(base_pairs) > 1:
+        if Category20c.get(len(base_pairs)):
             data['color'] = Category20c[len(base_pairs)]
         else:
             data['color'] = Colors.cerulean

diff --git a/nextflow.config b/nextflow.config
@@ -13,7 +13,7 @@
 params {
     help = false
     out_dir = "output"
-    wfversion = "v0.1.6"
+    wfversion = "v0.1.7"
     fastq = null
     references = null
     counts = "NO_COUNTS"

diff --git a/nextflow_schema.json b/nextflow_schema.json
@@ -128,7 +128,7 @@
                 },
                 "wfversion": {
                     "type": "string",
-                    "default": "v0.1.6",
+                    "default": "v0.1.7",
                     "hidden": true
                 }
             }