#6028 – Support all remaining types of bond from small molecules mode…

… in macro molecules mode (#6181) * #6028 – Support all remaining types of bond from small molecules mode in macro molecules mode * #6028 – Change Up/Down bond appearance, update UI tests * #6028 – Resolve merge conflicts, fix UI tests * #6028 – Increase monomers locator index by 1 caused by added arrow marker <use> tag
epam · Dec 27, 2024 · e3e55bf · e3e55bf
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diff --git a/...s-images-09499-trl-P-action-CIP-is-calculated-for-elements-2-chromium-linux.png b/...s-images-09499-trl-P-action-CIP-is-calculated-for-elements-2-chromium-linux.png
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diff --git a/...bond---5ccd3---Made-Broken-and-changes-reaction-center-ket-1-chromium-linux.png b/...bond---5ccd3---Made-Broken-and-changes-reaction-center-ket-1-chromium-linux.png
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diff --git a/...types-of-bond---Ring-topology---Center-reaction-center-ket-1-chromium-linux.png b/...types-of-bond---Ring-topology---Center-reaction-center-ket-1-chromium-linux.png
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diff --git a/...lecules-connected-by-All-types-of-bond---Ring-topology-ket-1-chromium-linux.png b/...lecules-connected-by-All-types-of-bond---Ring-topology-ket-1-chromium-linux.png
diff --git a/...lecules-connected-by-All-types-of-bond---Ring-topology-ket-2-chromium-linux.png b/...lecules-connected-by-All-types-of-bond---Ring-topology-ket-2-chromium-linux.png
diff --git a/...bond---a7710---Made-broken-and-changes-reaction-center-ket-1-chromium-linux.png b/...bond---a7710---Made-broken-and-changes-reaction-center-ket-1-chromium-linux.png
diff --git a/...bond---c1c46---Made-Broken-and-changes-reaction-center-ket-1-chromium-linux.png b/...bond---c1c46---Made-Broken-and-changes-reaction-center-ket-1-chromium-linux.png
diff --git a/...bond---db3d3---Made-Broken-and-changes-reaction-center-ket-2-chromium-linux.png b/...bond---db3d3---Made-Broken-and-changes-reaction-center-ket-2-chromium-linux.png
diff --git a/...bond---e435a---Made-Broken-and-changes-reaction-center-ket-2-chromium-linux.png b/...bond---e435a---Made-Broken-and-changes-reaction-center-ket-2-chromium-linux.png
diff --git a/...s-snapshots/1-Molecules-connected-by-All-types-of-bond-ket-1-chromium-linux.png b/...s-snapshots/1-Molecules-connected-by-All-types-of-bond-ket-1-chromium-linux.png
diff --git a/...s-snapshots/1-Molecules-connected-by-All-types-of-bond-ket-2-chromium-linux.png b/...s-snapshots/1-Molecules-connected-by-All-types-of-bond-ket-2-chromium-linux.png
diff --git a/...es-of--116fc-ed---S-Group---SRU-polymer---Head-to-tail-ket-1-chromium-linux.png b/...es-of--116fc-ed---S-Group---SRU-polymer---Head-to-tail-ket-1-chromium-linux.png
diff --git a/...es-of--2adec-ed---R-Group-fragmens---Attachment-points-ket-1-chromium-linux.png b/...es-of--2adec-ed---R-Group-fragmens---Attachment-points-ket-1-chromium-linux.png
diff --git a/...es-of--2c5e3-topology---Unmarked---S-Group---Superatom-ket-1-chromium-linux.png b/...es-of--2c5e3-topology---Unmarked---S-Group---Superatom-ket-1-chromium-linux.png
diff --git a/...es-of--32197-marked---S-Group---Data---Bond---Absolute-ket-1-chromium-linux.png b/...es-of--32197-marked---S-Group---Data---Bond---Absolute-ket-1-chromium-linux.png
diff --git a/...es-of--367e9-ng-topology---Unmarked---R-Group-fragmens-ket-1-chromium-linux.png b/...es-of--367e9-ng-topology---Unmarked---R-Group-fragmens-ket-1-chromium-linux.png
diff --git a/...es-of--383a3-marked---S-Group---Data---Bond---Relative-ket-1-chromium-linux.png b/...es-of--383a3-marked---S-Group---Data---Bond---Relative-ket-1-chromium-linux.png
diff --git a/...es-of--42b8c-ed---R-Group-fragmens---Attachment-points-ket-1-chromium-linux.png b/...es-of--42b8c-ed---R-Group-fragmens---Attachment-points-ket-1-chromium-linux.png
diff --git a/...es-of--42f79-ed---S-Group---SRU-polymer---Head-to-head-ket-1-chromium-linux.png b/...es-of--42f79-ed---S-Group---SRU-polymer---Head-to-head-ket-1-chromium-linux.png
diff --git a/...es-of--49dae-marked---S-Group---Data---Bond---Absolute-ket-1-chromium-linux.png b/...es-of--49dae-marked---S-Group---Data---Bond---Absolute-ket-1-chromium-linux.png
diff --git a/...es-of--4d6ef-ther-topology---Unmarked---R-Group-labels-ket-1-chromium-linux.png b/...es-of--4d6ef-ther-topology---Unmarked---R-Group-labels-ket-1-chromium-linux.png
diff --git a/...es-of--5d668-marked---S-Group---Data---Bond---Relative-ket-1-chromium-linux.png b/...es-of--5d668-marked---S-Group---Data---Bond---Relative-ket-1-chromium-linux.png
diff --git a/...es-of--71216----S-Group---SRU-polymer---Either-unknown-ket-1-chromium-linux.png b/...es-of--71216----S-Group---SRU-polymer---Either-unknown-ket-1-chromium-linux.png
diff --git a/...es-of--8a7e9-er-topology---Unmarked---R-Group-fragmens-ket-1-chromium-linux.png b/...es-of--8a7e9-er-topology---Unmarked---R-Group-fragmens-ket-1-chromium-linux.png
diff --git a/...es-of--8c807-ed---S-Group---SRU-polymer---Head-to-head-ket-1-chromium-linux.png b/...es-of--8c807-ed---S-Group---SRU-polymer---Head-to-head-ket-1-chromium-linux.png
diff --git a/...es-of--9ce0d-ed---S-Group---SRU-polymer---Head-to-tail-ket-1-chromium-linux.png b/...es-of--9ce0d-ed---S-Group---SRU-polymer---Head-to-tail-ket-1-chromium-linux.png
diff --git a/...es-of--a647c-topology---Unmarked---S-Group---Superatom-ket-1-chromium-linux.png b/...es-of--a647c-topology---Unmarked---S-Group---Superatom-ket-1-chromium-linux.png
diff --git a/...es-of--b58d7----S-Group---SRU-polymer---Either-unknown-ket-1-chromium-linux.png b/...es-of--b58d7----S-Group---SRU-polymer---Either-unknown-ket-1-chromium-linux.png
diff --git a/...es-of--18a05-ogy---Unmarked---S-Group---Multipal-group-ket-1-chromium-linux.png b/...es-of--18a05-ogy---Unmarked---S-Group---Multipal-group-ket-1-chromium-linux.png
diff --git a/...es-of--c1434-ogy---Unmarked---S-Group---Multipal-group-ket-1-chromium-linux.png b/...es-of--c1434-ogy---Unmarked---S-Group---Multipal-group-ket-1-chromium-linux.png
diff --git a/...es-of--27549-gy---Unmarked---S-Group---Query-component-ket-1-chromium-linux.png b/...es-of--27549-gy---Unmarked---S-Group---Query-component-ket-1-chromium-linux.png
diff --git a/...es-of--2bdaa-gy---Unmarked---S-Group---Query-component-ket-1-chromium-linux.png b/...es-of--2bdaa-gy---Unmarked---S-Group---Query-component-ket-1-chromium-linux.png
diff --git a/...ith-QF-04c26-marked---S-Group---Data---Bond---Relative-ket-1-chromium-linux.png b/...ith-QF-04c26-marked---S-Group---Data---Bond---Relative-ket-1-chromium-linux.png
diff --git a/...ith-QF-0d146-marked---S-Group---Data---Bond---Relative-ket-2-chromium-linux.png b/...ith-QF-0d146-marked---S-Group---Data---Bond---Relative-ket-2-chromium-linux.png
diff --git a/...ith-QF-0d411-marked---S-Group---Data---Bond---Absolute-ket-1-chromium-linux.png b/...ith-QF-0d411-marked---S-Group---Data---Bond---Absolute-ket-1-chromium-linux.png
diff --git a/...ith-QF-0ea9a----S-Group---SRU-polymer---Either-unknown-ket-2-chromium-linux.png b/...ith-QF-0ea9a----S-Group---SRU-polymer---Either-unknown-ket-2-chromium-linux.png
diff --git a/...ith-QF-1beb5----S-Group---SRU-polymer---Either-unknown-ket-2-chromium-linux.png b/...ith-QF-1beb5----S-Group---SRU-polymer---Either-unknown-ket-2-chromium-linux.png
diff --git a/...ith-QF-1e24a-ng-topology---Unmarked---R-Group-fragmens-ket-1-chromium-linux.png b/...ith-QF-1e24a-ng-topology---Unmarked---R-Group-fragmens-ket-1-chromium-linux.png
diff --git a/...ith-QF-20fbc-pology---Unmarked---R-Group-fragmens---At-ket-1-chromium-linux.png b/...ith-QF-20fbc-pology---Unmarked---R-Group-fragmens---At-ket-1-chromium-linux.png
diff --git a/...ith-QF-2ffc7-ed---S-Group---SRU-polymer---Head-to-head-ket-2-chromium-linux.png b/...ith-QF-2ffc7-ed---S-Group---SRU-polymer---Head-to-head-ket-2-chromium-linux.png
diff --git a/...ith-QF-314bf-er-topology---Unmarked---R-Group-fragmens-ket-1-chromium-linux.png b/...ith-QF-314bf-er-topology---Unmarked---R-Group-fragmens-ket-1-chromium-linux.png
diff --git a/...ith-QF-365d1-topology---Unmarked---S-Group---Superatom-ket-2-chromium-linux.png b/...ith-QF-365d1-topology---Unmarked---S-Group---Superatom-ket-2-chromium-linux.png
diff --git a/...ith-QF-392f4-ed---S-Group---SRU-polymer---Head-to-tail-ket-2-chromium-linux.png b/...ith-QF-392f4-ed---S-Group---SRU-polymer---Head-to-tail-ket-2-chromium-linux.png
diff --git a/...ith-QF-3d4d0-ed---R-Group-fragmens---Attachment-points-ket-2-chromium-linux.png b/...ith-QF-3d4d0-ed---R-Group-fragmens---Attachment-points-ket-2-chromium-linux.png
diff --git a/...ith-QF-40449-topology---Unmarked---S-Group---Superatom-ket-2-chromium-linux.png b/...ith-QF-40449-topology---Unmarked---S-Group---Superatom-ket-2-chromium-linux.png
diff --git a/...ith-QF-41a2f-marked---S-Group---Data---Bond---Relative-ket-1-chromium-linux.png b/...ith-QF-41a2f-marked---S-Group---Data---Bond---Relative-ket-1-chromium-linux.png
diff --git a/...ith-QF-44473-pology---Unmarked---R-Group-fragmens---At-ket-2-chromium-linux.png b/...ith-QF-44473-pology---Unmarked---R-Group-fragmens---At-ket-2-chromium-linux.png
diff --git a/...ith-QF-49155-topology---Unmarked---S-Group---Superatom-ket-1-chromium-linux.png b/...ith-QF-49155-topology---Unmarked---S-Group---Superatom-ket-1-chromium-linux.png
diff --git a/...ith-QF-5be0e-marked---S-Group---Data---Bond---Relative-ket-2-chromium-linux.png b/...ith-QF-5be0e-marked---S-Group---Data---Bond---Relative-ket-2-chromium-linux.png
diff --git a/...ith-QF-5e8af----S-Group---SRU-polymer---Either-unknown-ket-1-chromium-linux.png b/...ith-QF-5e8af----S-Group---SRU-polymer---Either-unknown-ket-1-chromium-linux.png
diff --git a/...ith-QF-65811-ed---S-Group---SRU-polymer---Head-to-tail-ket-1-chromium-linux.png b/...ith-QF-65811-ed---S-Group---SRU-polymer---Head-to-tail-ket-1-chromium-linux.png
diff --git a/...ith-QF-790c7-ed---S-Group---SRU-polymer---Head-to-head-ket-2-chromium-linux.png b/...ith-QF-790c7-ed---S-Group---SRU-polymer---Head-to-head-ket-2-chromium-linux.png
diff --git a/...ith-QF-7fbbe-Ring-topology---Unmarked---R-Group-labels-ket-1-chromium-linux.png b/...ith-QF-7fbbe-Ring-topology---Unmarked---R-Group-labels-ket-1-chromium-linux.png
diff --git a/...ith-QF-809b9-topology---Unmarked---S-Group---Superatom-ket-1-chromium-linux.png b/...ith-QF-809b9-topology---Unmarked---S-Group---Superatom-ket-1-chromium-linux.png
diff --git a/...ith-QF-821c4-marked---S-Group---Data---Bond---Attached-ket-1-chromium-linux.png b/...ith-QF-821c4-marked---S-Group---Data---Bond---Attached-ket-1-chromium-linux.png
diff --git a/...ith-QF-89b66-er-topology---Unmarked---R-Group-fragmens-ket-2-chromium-linux.png b/...ith-QF-89b66-er-topology---Unmarked---R-Group-fragmens-ket-2-chromium-linux.png
diff --git a/...ith-QF-a1203-Ring-topology---Unmarked---R-Group-labels-ket-2-chromium-linux.png b/...ith-QF-a1203-Ring-topology---Unmarked---R-Group-labels-ket-2-chromium-linux.png
diff --git a/...ith-QF-a227d-ther-topology---Unmarked---R-Group-labels-ket-2-chromium-linux.png b/...ith-QF-a227d-ther-topology---Unmarked---R-Group-labels-ket-2-chromium-linux.png
diff --git a/...ith-QF-a4607-marked---S-Group---Data---Bond---Absolute-ket-2-chromium-linux.png b/...ith-QF-a4607-marked---S-Group---Data---Bond---Absolute-ket-2-chromium-linux.png
diff --git a/...ith-QF-a51b1-ther-topology---Unmarked---R-Group-labels-ket-1-chromium-linux.png b/...ith-QF-a51b1-ther-topology---Unmarked---R-Group-labels-ket-1-chromium-linux.png
diff --git a/...ith-QF-aa8d4-marked---S-Group---Data---Bond---Absolute-ket-1-chromium-linux.png b/...ith-QF-aa8d4-marked---S-Group---Data---Bond---Absolute-ket-1-chromium-linux.png
diff --git a/...ith-QF-b484c-ed---S-Group---SRU-polymer---Head-to-tail-ket-2-chromium-linux.png b/...ith-QF-b484c-ed---S-Group---SRU-polymer---Head-to-tail-ket-2-chromium-linux.png
diff --git a/...ith-QF-b8588----S-Group---SRU-polymer---Either-unknown-ket-1-chromium-linux.png b/...ith-QF-b8588----S-Group---SRU-polymer---Either-unknown-ket-1-chromium-linux.png
diff --git a/...ith-QF-c4bb0-ed---S-Group---SRU-polymer---Head-to-tail-ket-1-chromium-linux.png b/...ith-QF-c4bb0-ed---S-Group---SRU-polymer---Head-to-tail-ket-1-chromium-linux.png
diff --git a/...ith-QF-c9bf9-ed---S-Group---SRU-polymer---Head-to-head-ket-1-chromium-linux.png b/...ith-QF-c9bf9-ed---S-Group---SRU-polymer---Head-to-head-ket-1-chromium-linux.png
diff --git a/...ith-QF-d1464-marked---S-Group---Data---Bond---Absolute-ket-2-chromium-linux.png b/...ith-QF-d1464-marked---S-Group---Data---Bond---Absolute-ket-2-chromium-linux.png
diff --git a/...ith-QF-e130c-ng-topology---Unmarked---R-Group-fragmens-ket-2-chromium-linux.png b/...ith-QF-e130c-ng-topology---Unmarked---R-Group-fragmens-ket-2-chromium-linux.png
diff --git a/...ith-QF-e4508-ed---R-Group-fragmens---Attachment-points-ket-1-chromium-linux.png b/...ith-QF-e4508-ed---R-Group-fragmens---Attachment-points-ket-1-chromium-linux.png
diff --git a/...ith-QF-f9524-ed---S-Group---SRU-polymer---Head-to-head-ket-1-chromium-linux.png b/...ith-QF-f9524-ed---S-Group---SRU-polymer---Head-to-head-ket-1-chromium-linux.png
diff --git a/...ith-QF-060d7-gy---Unmarked---S-Group---Query-component-ket-1-chromium-linux.png b/...ith-QF-060d7-gy---Unmarked---S-Group---Query-component-ket-1-chromium-linux.png
diff --git a/...ith-QF-325d9-gy---Unmarked---S-Group---Query-component-ket-1-chromium-linux.png b/...ith-QF-325d9-gy---Unmarked---S-Group---Query-component-ket-1-chromium-linux.png
diff --git a/...ith-QF-e1c6e-ogy---Unmarked---S-Group---Multipal-group-ket-1-chromium-linux.png b/...ith-QF-e1c6e-ogy---Unmarked---S-Group---Multipal-group-ket-1-chromium-linux.png
diff --git a/...ith-QF-f735c-ogy---Unmarked---S-Group---Multipal-group-ket-1-chromium-linux.png b/...ith-QF-f735c-ogy---Unmarked---S-Group---Multipal-group-ket-1-chromium-linux.png
diff --git a/...bond-w-11063-ng-topology---Made-broken-reaction-center-ket-1-chromium-linux.png b/...bond-w-11063-ng-topology---Made-broken-reaction-center-ket-1-chromium-linux.png
diff --git a/...bond-w-12152-ature-atom-on-the-canvas---Chain-topology-ket-2-chromium-linux.png b/...bond-w-12152-ature-atom-on-the-canvas---Chain-topology-ket-2-chromium-linux.png
diff --git a/...bond-w-128af--topology---Order-changes-reaction-center-ket-1-chromium-linux.png b/...bond-w-128af--topology---Order-changes-reaction-center-ket-1-chromium-linux.png
diff --git a/...bond-w-16868---Made-Broken-and-changes-reaction-center-ket-1-chromium-linux.png b/...bond-w-16868---Made-Broken-and-changes-reaction-center-ket-1-chromium-linux.png
diff --git a/...bond-w-21b62---Made-broken-and-changes-reaction-center-ket-2-chromium-linux.png b/...bond-w-21b62---Made-broken-and-changes-reaction-center-ket-2-chromium-linux.png
diff --git a/...bond-w-222e4-eature-atom-on-the-canvas---Ring-topology-ket-1-chromium-linux.png b/...bond-w-222e4-eature-atom-on-the-canvas---Ring-topology-ket-1-chromium-linux.png
diff --git a/...bond-w-24820-in-topology---Made-broken-reaction-center-ket-2-chromium-linux.png b/...bond-w-24820-in-topology---Made-broken-reaction-center-ket-2-chromium-linux.png
diff --git a/...bond-w-28f96---Made-broken-and-changes-reaction-center-ket-1-chromium-linux.png b/...bond-w-28f96---Made-broken-and-changes-reaction-center-ket-1-chromium-linux.png
diff --git a/...bond-w-364d5-ng-topology---Made-broken-reaction-center-ket-2-chromium-linux.png b/...bond-w-364d5-ng-topology---Made-broken-reaction-center-ket-2-chromium-linux.png
diff --git a/...bond-w-36cfd-ther-topology---No-change-reaction-center-ket-1-chromium-linux.png b/...bond-w-36cfd-ther-topology---No-change-reaction-center-ket-1-chromium-linux.png
diff --git a/...bond-w-44099-in-topology---Made-broken-reaction-center-ket-1-chromium-linux.png b/...bond-w-44099-in-topology---Made-broken-reaction-center-ket-1-chromium-linux.png
diff --git a/...bond-w-517cc-ing-topology---Not-center-reaction-center-ket-2-chromium-linux.png b/...bond-w-517cc-ing-topology---Not-center-reaction-center-ket-2-chromium-linux.png
diff --git a/...bond-w-56a4f---Made-Broken-and-changes-reaction-center-ket-2-chromium-linux.png b/...bond-w-56a4f---Made-Broken-and-changes-reaction-center-ket-2-chromium-linux.png
diff --git a/...bond-w-576c5--topology---Order-changes-reaction-center-ket-1-chromium-linux.png b/...bond-w-576c5--topology---Order-changes-reaction-center-ket-1-chromium-linux.png
diff --git a/...bond-w-6b473-her-topology---Not-center-reaction-center-ket-1-chromium-linux.png b/...bond-w-6b473-her-topology---Not-center-reaction-center-ket-1-chromium-linux.png
diff --git a/...bond-w-6b9c3-Ring-topology---No-change-reaction-center-ket-1-chromium-linux.png b/...bond-w-6b9c3-Ring-topology---No-change-reaction-center-ket-1-chromium-linux.png
diff --git a/...bond-w-70a4a-ther-topology---No-change-reaction-center-ket-2-chromium-linux.png b/...bond-w-70a4a-ther-topology---No-change-reaction-center-ket-2-chromium-linux.png
diff --git a/...bond-w-757c5-ature-atom-on-the-canvas---Chain-topology-ket-1-chromium-linux.png b/...bond-w-757c5-ature-atom-on-the-canvas---Chain-topology-ket-1-chromium-linux.png
diff --git a/...bond-w-79457-hain-topology---No-change-reaction-center-ket-2-chromium-linux.png b/...bond-w-79457-hain-topology---No-change-reaction-center-ket-2-chromium-linux.png
diff --git a/...bond-w-7c054---Made-Broken-and-changes-reaction-center-ket-1-chromium-linux.png b/...bond-w-7c054---Made-Broken-and-changes-reaction-center-ket-1-chromium-linux.png
diff --git a/...bond-w-7deff--topology---Order-changes-reaction-center-ket-2-chromium-linux.png b/...bond-w-7deff--topology---Order-changes-reaction-center-ket-2-chromium-linux.png
diff --git a/...bond-w-8d1ac---Made-Broken-and-changes-reaction-center-ket-2-chromium-linux.png b/...bond-w-8d1ac---Made-Broken-and-changes-reaction-center-ket-2-chromium-linux.png
diff --git a/...bond-w-9a15c-ain-topology---Not-center-reaction-center-ket-2-chromium-linux.png b/...bond-w-9a15c-ain-topology---Not-center-reaction-center-ket-2-chromium-linux.png
diff --git a/...bond-w-9d0ad----Ring-topology---Center-reaction-center-ket-1-chromium-linux.png b/...bond-w-9d0ad----Ring-topology---Center-reaction-center-ket-1-chromium-linux.png
diff --git a/...bond-w-a9c9c-er-topology---Made-broken-reaction-center-ket-2-chromium-linux.png b/...bond-w-a9c9c-er-topology---Made-broken-reaction-center-ket-2-chromium-linux.png
diff --git a/...bond-w-bcd75--topology---Order-changes-reaction-center-ket-2-chromium-linux.png b/...bond-w-bcd75--topology---Order-changes-reaction-center-ket-2-chromium-linux.png
diff --git a/...bond-w-cb25e-Ring-topology---No-change-reaction-center-ket-2-chromium-linux.png b/...bond-w-cb25e-Ring-topology---No-change-reaction-center-ket-2-chromium-linux.png
diff --git a/...bond-w-ce67a---Chain-topology---Center-reaction-center-ket-2-chromium-linux.png b/...bond-w-ce67a---Chain-topology---Center-reaction-center-ket-2-chromium-linux.png
diff --git a/...bond-w-cfb1f-er-topology---Made-broken-reaction-center-ket-1-chromium-linux.png b/...bond-w-cfb1f-er-topology---Made-broken-reaction-center-ket-1-chromium-linux.png
diff --git a/...bond-w-d3f05-ing-topology---Not-center-reaction-center-ket-1-chromium-linux.png b/...bond-w-d3f05-ing-topology---Not-center-reaction-center-ket-1-chromium-linux.png
diff --git a/...bond-w-d9bcd--Either-topology---Center-reaction-center-ket-1-chromium-linux.png b/...bond-w-d9bcd--Either-topology---Center-reaction-center-ket-1-chromium-linux.png
diff --git a/...bond-w-dbb0f-eature-atom-on-the-canvas---Ring-topology-ket-2-chromium-linux.png b/...bond-w-dbb0f-eature-atom-on-the-canvas---Ring-topology-ket-2-chromium-linux.png
diff --git a/...bond-w-e7017----Ring-topology---Center-reaction-center-ket-2-chromium-linux.png b/...bond-w-e7017----Ring-topology---Center-reaction-center-ket-2-chromium-linux.png
diff --git a/...bond-w-ece6c--topology---Order-changes-reaction-center-ket-1-chromium-linux.png b/...bond-w-ece6c--topology---Order-changes-reaction-center-ket-1-chromium-linux.png
diff --git a/...bond-w-ef156---Chain-topology---Center-reaction-center-ket-1-chromium-linux.png b/...bond-w-ef156---Chain-topology---Center-reaction-center-ket-1-chromium-linux.png
diff --git a/...bond-w-f04be-her-topology---Not-center-reaction-center-ket-2-chromium-linux.png b/...bond-w-f04be-her-topology---Not-center-reaction-center-ket-2-chromium-linux.png
diff --git a/...bond-w-f2a66-hain-topology---No-change-reaction-center-ket-1-chromium-linux.png b/...bond-w-f2a66-hain-topology---No-change-reaction-center-ket-1-chromium-linux.png
diff --git a/...bond-w-f2d0c-ain-topology---Not-center-reaction-center-ket-1-chromium-linux.png b/...bond-w-f2d0c-ain-topology---Not-center-reaction-center-ket-1-chromium-linux.png
diff --git a/...bond-w-f84e3--Either-topology---Center-reaction-center-ket-2-chromium-linux.png b/...bond-w-f84e3--Either-topology---Center-reaction-center-ket-2-chromium-linux.png
diff --git a/...bond-w-f8db0--topology---Order-changes-reaction-center-ket-2-chromium-linux.png b/...bond-w-f8db0--topology---Order-changes-reaction-center-ket-2-chromium-linux.png
diff --git a/...ll-types-of-bond-with-Query-feature-atom-on-the-canvas-ket-1-chromium-linux.png b/...ll-types-of-bond-with-Query-feature-atom-on-the-canvas-ket-1-chromium-linux.png
diff --git a/...ll-types-of-bond-with-Query-feature-atom-on-the-canvas-ket-2-chromium-linux.png b/...ll-types-of-bond-with-Query-feature-atom-on-the-canvas-ket-2-chromium-linux.png
diff --git a/...tests/Macromolecule-editor/Ambiguous-Monomers/ambiguous-monomer-attachment-points.spec.ts b/...tests/Macromolecule-editor/Ambiguous-Monomers/ambiguous-monomer-attachment-points.spec.ts
@@ -86,254 +86,254 @@ const ambiguousMonomers: IHELMString[] = [
     testDescription:
       '1. Ambiguous alternatives peptide made of peptide(R1) and peptide(R1) should result in peptide(R1)',
     HELMString: 'PEPTIDE1{([Pyrro],[Am-])}$$$V2.0',
-    monomerLocatorIndex: 0,
+    monomerLocatorIndex: 1,
   },
   {
     testDescription:
       '2. Ambiguous alternatives peptide made of peptide(R2) and peptide(R2) should result in peptide(R2)',
     HELMString: 'PEPTIDE1{([Glc],[Hva])}$$$V2.0',
-    monomerLocatorIndex: 0,
+    monomerLocatorIndex: 1,
   },
   {
     testDescription:
       '3. Ambiguous alternatives peptide made of peptide(R2+R3) and peptide(R2+R3) should result in peptide(R2+R3)',
     HELMString: 'PEPTIDE1{([Mpa],[Mba])}$$$V2.0',
-    monomerLocatorIndex: 0,
+    monomerLocatorIndex: 1,
   },
   {
     testDescription:
       '4. Ambiguous alternatives peptide made of peptide(R1+R2) and peptide(R1+R2) should result in peptide(R1+R2)',
     HELMString: 'PEPTIDE1{([D-Nle],[2Nal])}$$$V2.0',
-    monomerLocatorIndex: 0,
+    monomerLocatorIndex: 1,
   },
   {
     testDescription:
       '5. Ambiguous alternatives peptide made of peptide(R1+R2+R3) and peptide(R1+R2+R3) should result in peptide(R1+R2+R3)',
     HELMString: 'PEPTIDE1{([Aad],[Asu])}$$$V2.0',
-    monomerLocatorIndex: 0,
+    monomerLocatorIndex: 1,
   },
   {
     testDescription:
       '6. Ambiguous alternatives peptide made of peptide(R1) and peptide(R1+R2+R3) should result in peptide(R1)',
     HELMString: 'PEPTIDE1{([Pyrro],[Asu])}$$$V2.0',
-    monomerLocatorIndex: 0,
+    monomerLocatorIndex: 1,
   },
   {
     testDescription:
       '7. Ambiguous alternatives peptide made of peptide(R2) and peptide(R1) should result in peptide with no APs',
     HELMString: 'PEPTIDE1{([Glc],[Am-])}$$$V2.0',
-    monomerLocatorIndex: 0,
+    monomerLocatorIndex: 1,
   },
   {
     testDescription:
       '8. Ambiguous alternatives peptide made of peptide(R2+R3) and peptide(R2) should result in peptide(R2)',
     HELMString: 'PEPTIDE1{([Mpa],[Hva])}$$$V2.0',
-    monomerLocatorIndex: 0,
+    monomerLocatorIndex: 1,
   },
   {
     testDescription:
       '9. Ambiguous alternatives peptide made of peptide(R1+R2) and peptide(R2+R3) should result in peptide(R2)',
     HELMString: 'PEPTIDE1{([D-Nle],[Mba])}$$$V2.0',
-    monomerLocatorIndex: 0,
+    monomerLocatorIndex: 1,
   },
   {
     testDescription:
       '10. Ambiguous alternatives peptide made of peptide(R1+R2+R3) and peptide(R1+R2) should result in peptide(R1+R2)',
     HELMString: 'PEPTIDE1{([Aad],[2Nal])}$$$V2.0',
-    monomerLocatorIndex: 0,
+    monomerLocatorIndex: 1,
   },
   {
     testDescription:
       '11. Ambiguous alternatives peptide made of peptide(R1) and peptide(R1+R2) should result in peptide(R1)',
     HELMString: 'PEPTIDE1{([Pyrro],[2Nal])}$$$V2.0',
-    monomerLocatorIndex: 0,
+    monomerLocatorIndex: 1,
   },
   {
     testDescription:
       '12. Ambiguous alternatives peptide made of peptide(R2) and peptide(R1+R2+R3) should result in peptide(R2)',
     HELMString: 'PEPTIDE1{([Glc],[Asu])}$$$V2.0',
-    monomerLocatorIndex: 0,
+    monomerLocatorIndex: 1,
   },
   {
     testDescription:
       '13. Ambiguous alternatives peptide made of peptide(R2+R3) and peptide(R1) should result in peptide with no APs',
     HELMString: 'PEPTIDE1{([Mpa],[Am-])}$$$V2.0',
-    monomerLocatorIndex: 0,
+    monomerLocatorIndex: 1,
   },
   {
     testDescription:
       '14. Ambiguous alternatives peptide made of peptide(R1+R2) and peptide(R2) should result in peptide(R2)',
     HELMString: 'PEPTIDE1{([D-Nle],[Hva])}$$$V2.0',
-    monomerLocatorIndex: 0,
+    monomerLocatorIndex: 1,
   },
   {
     testDescription:
       '15. Ambiguous alternatives peptide made of peptide(R1+R2+R3) and peptide(R2+R3) should result in peptide(R2+R3)',
     HELMString: 'PEPTIDE1{([Aad],[Mba])}$$$V2.0',
-    monomerLocatorIndex: 0,
+    monomerLocatorIndex: 1,
   },
   {
     testDescription:
       '16. Ambiguous mixed peptide made of peptide(R1) and peptide(R1) should result in peptide(R1)',
     HELMString: 'PEPTIDE1{([Pyrro]+[Am-])}$$$V2.0',
-    monomerLocatorIndex: 0,
+    monomerLocatorIndex: 1,
   },
   {
     testDescription:
       '17. Ambiguous mixed peptide made of peptide(R2) and peptide(R2) should result in peptide(R2)',
     HELMString: 'PEPTIDE1{([Glc]+[Hva])}$$$V2.0',
-    monomerLocatorIndex: 0,
+    monomerLocatorIndex: 1,
   },
   {
     testDescription:
       '18. Ambiguous mixed peptide made of peptide(R2+R3) and peptide(R2+R3) should result in peptide(R2+R3)',
     HELMString: 'PEPTIDE1{([Mpa]+[Mba])}$$$V2.0',
-    monomerLocatorIndex: 0,
+    monomerLocatorIndex: 1,
   },
   {
     testDescription:
       '19. Ambiguous mixed peptide made of peptide(R1+R2) and peptide(R1+R2) should result in peptide(R1+R2)',
     HELMString: 'PEPTIDE1{([D-Nle]+[2Nal])}$$$V2.0',
-    monomerLocatorIndex: 0,
+    monomerLocatorIndex: 1,
   },
   {
     testDescription:
       '20. Ambiguous mixed peptide made of peptide(R1+R2+R3) and peptide(R1+R2+R3) should result in peptide(R1+R2+R3)',
     HELMString: 'PEPTIDE1{([Aad]+[Asu])}$$$V2.0',
-    monomerLocatorIndex: 0,
+    monomerLocatorIndex: 1,
   },
   {
     testDescription:
       '21. Ambiguous mixed peptide made of peptide(R1) and peptide(R1+R2+R3) should result in peptide(R1)',
     HELMString: 'PEPTIDE1{([Pyrro]+[Asu])}$$$V2.0',
-    monomerLocatorIndex: 0,
+    monomerLocatorIndex: 1,
   },
   {
     testDescription:
       '22. Ambiguous mixed peptide made of peptide(R2) and peptide(R1) should result in peptide with no APs',
     HELMString: 'PEPTIDE1{([Glc]+[Am-])}$$$V2.0',
-    monomerLocatorIndex: 0,
+    monomerLocatorIndex: 1,
   },
   {
     testDescription:
       '23. Ambiguous mixed peptide made of peptide(R2+R3) and peptide(R2) should result in peptide(R2)',
     HELMString: 'PEPTIDE1{([Mpa]+[Hva])}$$$V2.0',
-    monomerLocatorIndex: 0,
+    monomerLocatorIndex: 1,
   },
   {
     testDescription:
       '24. Ambiguous mixed peptide made of peptide(R1+R2) and peptide(R2+R3) should result in peptide(R2)',
     HELMString: 'PEPTIDE1{([D-Nle]+[Mba])}$$$V2.0',
-    monomerLocatorIndex: 0,
+    monomerLocatorIndex: 1,
   },
   {
     testDescription:
       '25. Ambiguous mixed peptide made of peptide(R1+R2+R3) and peptide(R1+R2) should result in peptide(R1+R2)',
     HELMString: 'PEPTIDE1{([Aad]+[2Nal])}$$$V2.0',
-    monomerLocatorIndex: 0,
+    monomerLocatorIndex: 1,
   },
   {
     testDescription:
       '26. Ambiguous mixed peptide made of peptide(R1) and peptide(R1+R2) should result in peptide(R1)',
     HELMString: 'PEPTIDE1{([Pyrro]+[2Nal])}$$$V2.0',
-    monomerLocatorIndex: 0,
+    monomerLocatorIndex: 1,
   },
   {
     testDescription:
       '27. Ambiguous mixed peptide made of peptide(R2) and peptide(R1+R2+R3) should result in peptide(R2)',
     HELMString: 'PEPTIDE1{([Glc]+[Asu])}$$$V2.0',
-    monomerLocatorIndex: 0,
+    monomerLocatorIndex: 1,
   },
   {
     testDescription:
       '28. Ambiguous mixed peptide made of peptide(R2+R3) and peptide(R1) should result in peptide with no APs',
     HELMString: 'PEPTIDE1{([Mpa]+[Am-])}$$$V2.0',
-    monomerLocatorIndex: 0,
+    monomerLocatorIndex: 1,
   },
   {
     testDescription:
       '29. Ambiguous mixed peptide made of peptide(R1+R2) and peptide(R2) should result in peptide(R2)',
     HELMString: 'PEPTIDE1{([D-Nle]+[Hva])}$$$V2.0',
-    monomerLocatorIndex: 0,
+    monomerLocatorIndex: 1,
   },
   {
     testDescription:
       '30. Ambiguous mixed peptide made of peptide(R1+R2+R3) and peptide(R2+R3) should result in peptide(R2+R3)',
     HELMString: 'PEPTIDE1{([Aad]+[Mba])}$$$V2.0',
-    monomerLocatorIndex: 0,
+    monomerLocatorIndex: 1,
   },
   {
     testDescription:
       '31. Ambiguous alternatives base made of base(R1) and base(R1) should result in base(R1)',
     HELMString: 'RNA1{R([2imen2],[5meC])P}$$$$V2.0',
-    monomerLocatorIndex: 1,
+    monomerLocatorIndex: 2,
     pageReloadNeeded: true,
   },
   {
     testDescription:
       '32. Ambiguous alternatives base made of base(R1+R2) and base(R1+R2) should result in base(R1+R2)',
     HELMString: 'RNA1{R([oC64m5],[nC65U])P}$$$$V2.0',
-    monomerLocatorIndex: 1,
+    monomerLocatorIndex: 2,
   },
   {
     testDescription:
       '33. Ambiguous alternatives base made of base(R1+R2+R3) and base(R1+R2+R3) should result in base(R1+R2+R3)',
     HELMString: 'RNA1{R([nC6n5C],[nC6n8A])P}$$$$V2.0',
-    monomerLocatorIndex: 1,
+    monomerLocatorIndex: 2,
   },
   {
     testDescription:
       '34. Ambiguous alternatives base made of base(R1) and base(R1+R2+R3) should result in base(R1)',
     HELMString: 'RNA1{R([2imen2],[nC6n8A])P}$$$$V2.0',
-    monomerLocatorIndex: 1,
+    monomerLocatorIndex: 2,
   },
   {
     testDescription:
       '35. Ambiguous alternatives base made of base(R1+R2) and base(R1) should result in base(R1)',
     HELMString: 'RNA1{R([oC64m5],[5meC])P}$$$$V2.0',
-    monomerLocatorIndex: 1,
+    monomerLocatorIndex: 2,
   },
   {
     testDescription:
       '36. Ambiguous alternatives base made of base(R1+R2+R3) and base(R1+R2) should result in base(R1+R2)',
     HELMString: 'RNA1{R([nC6n5C],[nC65U])P}$$$$V2.0',
-    monomerLocatorIndex: 1,
+    monomerLocatorIndex: 2,
   },
   {
     testDescription:
       '37. Ambiguous mixed base made of base(R1) and base(R1) should result in base(R1)',
     HELMString: 'RNA1{R([2imen2]+[5meC])P}$$$$V2.0',
-    monomerLocatorIndex: 1,
+    monomerLocatorIndex: 2,
   },
   {
     testDescription:
       '38. Ambiguous mixed base made of base(R1+R2) and base(R1+R2) should result in base(R1+R2)',
     HELMString: 'RNA1{R([oC64m5]+[nC65U])P}$$$$V2.0',
-    monomerLocatorIndex: 1,
+    monomerLocatorIndex: 2,
   },
   {
     testDescription:
       '39. Ambiguous mixed base made of base(R1+R2+R3) and base(R1+R2+R3) should result in base(R1+R2+R3)',
     HELMString: 'RNA1{R([nC6n5C]+[nC6n8A])P}$$$$V2.0',
-    monomerLocatorIndex: 1,
+    monomerLocatorIndex: 2,
   },
   {
     testDescription:
       '40. Ambiguous mixed base made of base(R1) and base(R1+R2+R3) should result in base(R1)',
     HELMString: 'RNA1{R([2imen2]+[nC6n8A])P}$$$$V2.0',
-    monomerLocatorIndex: 1,
+    monomerLocatorIndex: 2,
   },
   {
     testDescription:
       '41. Ambiguous mixed base made of base(R1+R2) and base(R1) should result in base(R1)',
     HELMString: 'RNA1{R([oC64m5]+[5meC])P}$$$$V2.0',
-    monomerLocatorIndex: 1,
+    monomerLocatorIndex: 2,
   },
   {
     testDescription:
       '42. Ambiguous mixed base made of base(R1+R2+R3) and base(R1+R2) should result in base(R1+R2)',
     HELMString: 'RNA1{R([nC6n5C]+[nC65U])P}$$$$V2.0',
-    monomerLocatorIndex: 1,
+    monomerLocatorIndex: 2,
   },
 ];