pr-checks: run hdf5 testsuite

run some of the hdf5 tests from the testpar directory for both ompio and romio.

Signed-off-by: Edgar Gabriel <[email protected]>

.github/workflows/hdf5-tests.yaml

@@ -0,0 +1,53 @@
+name: HDF5
+
+on: [pull_request]
+
+env:
+  OMPI_INSTALL_DIR=/opt/openmpi
+jobs:
+  hdf5-testsuite:
+    runs-on: ubuntu-22.04
+    steps:
+    - name: Install dependencies
+      run: |
+        sudo apt update
+        sudo apt install -y --no-install-recommends wget
+    - uses: actions/checkout@v4
+      with:
+            submodules: recursive
+    - name: Build Open MPI
+      run: |
+        ./autogen.pl
+        ./configure --prefix=${OMPI_INSTALL_DIR} --with-pmix=internal --with-prrte=internal --with-hwloc=internal --with-libevent=internal --disable-mpi-fortran --disable-oshmem
+        make -j ${nproc} && make install
+    - name: Install HDF5
+      run: |
+         wget https://github.com/HDFGroup/hdf5/releases/latest/download/hdf5.tar.gz
+	 tar -xzf hdf5.tar.gz
+	 mv hdf5-1* hdf5
+	 cd hdf5
+	 export PATH=${OMPI_INSTALL_DIR}/bin:${PATH}
+	 export LD_LIBRARY_PATH=${OMPI_INSTALL_DIR}/lib:${LD_LIBRARY_PATH}
+	 ./configure --enable-parallel
+	 make -j ${nproc}
+    - name: Run testsuite (ompio)
+      run: |
+	 export PATH=${OMPI_INSTALL_DIR}/bin:${PATH}
+	 export LD_LIBRARY_PATH=${OMPI_INSTALL_DIR}/lib:${LD_LIBRARY_PATH}
+	 cd testpar
+	 HDF5TestExpress=0 mpirun -np 4 ./t_shapesame
+	 mpirun -np 4 ./t_filters_parallel
+	 mpirun -np 4 ./testphdf5
+	 cd ..
+	 timeout-minutes: 10
+
+    - name: Run testsuite (romio)
+      run: |
+	 export PATH=${OMPI_INSTALL_DIR}/bin:${PATH}
+	 export LD_LIBRARY_PATH=${OMPI_INSTALL_DIR}/lib:${LD_LIBRARY_PATH}
+	 cd testpar
+	 HDF5TestExpress=0 mpirun --mca io ^ompio -np 4 ./t_shapesame
+	 mpirun --mca io ^ompio -np 4 ./t_filters_parallel
+	 mpirun --mca io ^ompio -np 4 ./testphdf5
+	 cd ..
+	 timeout-minutes: 10