Add `--omit-paths` flag to `templates apply` #3427

Job	Run time
CLI	38s
OCI Implementation Registry Compatibility	1m 26s
Tests Matrix (src/test/container-features/containerFeaturesOrder.test.ts)	53s
Tests Matrix (src/test/container-features/e2e.test.ts)	3m 46s
Tests Matrix (src/test/container-features/featuresCLICommands.test.ts)	2m 56s
Tests Matrix (src/test/cli.build.test.ts)	8m 21s
Tests Matrix (src/test/cli.exec.buildKit.1.test.ts)	4m 50s
Tests Matrix (src/test/cli.exec.buildKit.2.test.ts)	5m 15s
Tests Matrix (src/test/cli.exec.nonBuildKit.1.test.ts)	5m 24s
Tests Matrix (src/test/cli.exec.nonBuildKit.2.test.ts)	5m 20s
Tests Matrix (src/test/cli.test.ts)	55s
Tests Matrix (src/test/cli.up.test.ts)	5m 40s
Tests Matrix (src/test/imageMetadata.test.ts)	5m 46s
Tests Matrix (src/test/container-features/containerFeaturesOCIPush.test.ts)	52s
Tests Matrix (--exclude src/test/container-features/containerFeaturesOrder.test.ts --exclude src/...	6m 45s
Tests	1s
	58m 48s

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