Bump certifi from 2022.12.7 to 2023.7.22 #50
Workflow file for this run
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name: Planemo | |
on: [push, pull_request] | |
env: | |
GALAXY_BRANCH: release_22.05 | |
jobs: | |
planemo_test: | |
name: Planemo test | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
chunk: [1, 2, 3] | |
steps: | |
- uses: actions/checkout@v1 | |
- uses: "dpryan79/github-actions/@master" | |
- name: planemo | |
run: | | |
source activate foo | |
conda update -c conda-forge -c bioconda samtools | |
./.planemo.sh ${{ matrix.chunk }} ${{ env.GALAXY_BRANCH }} | |
- uses: actions/upload-artifact@v3 | |
with: | |
name: 'Tool test output ${{ matrix.chunk }}' | |
path: upload | |
planemo_combine_outputs: | |
name: Combine chunked test results | |
needs: planemo_test | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python-version: ['3.7'] | |
steps: | |
- uses: actions/download-artifact@v3 | |
with: | |
path: artifacts | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Cache .cache/pip | |
uses: actions/cache@v3 | |
id: cache-pip | |
with: | |
path: ~/.cache/pip | |
key: pip_cache_py_${{ matrix.python-version }}_gxy_${{ env.GALAXY_BRANCH }} | |
- name: Combine outputs | |
uses: galaxyproject/planemo-ci-action@v1 | |
id: combine | |
with: | |
mode: combine | |
html-report: true | |
- uses: actions/upload-artifact@v3 | |
with: | |
name: 'All tool test results' | |
path: upload | |
- name: Check outputs | |
uses: galaxyproject/planemo-ci-action@v1 | |
id: check | |
with: | |
mode: check |